Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0043 ATGGGACTTCTTAGCTTTGAAATCAATACCATTTCTCCTTCTACCTTTCATTTTGCTGGGATTTCCTCTTTCCCTTCATACGCAATTCCAATTTCTCCGATACCCCTTTCCACCAATGTTCTCAACACCAGAGTTTCAATCAAGTTTCACCCTTTTTATTCCCCCAATCTCAAATTTGTGCCGCCACTCACTGCCTCTTCGCTCAATGATGCTTCCAATGTTGGGTTGATTAGTGACGTGGTTAATCCTAAAGACTTGGAATTTAAGCCTTCCTTTGATGTATATTTGAAGGCTATGGAATCCAGAACTTCAAGGAAGAAAAAACGTGCTTCTACTACTGATACCACATCTCAAAAACAGAATGTGAGGGGAAGGGGAGAAGAAGCAGATCAAAAAGTTGACAGGGTTGGAGAAAAAATTGATGGAAAGGAAGGGTTTGCAGCTGCTAAAGAAGACGGGAAAATTATAGTTATATACAAAGAAGAAGGTTCATCCACAAGTGATGACTCTGTGAGACAGAGAAAGACTAAAGAGTTTAAAAATGAGCACGGTAGGAAAGAAAGCCAAATTGATGTAAAGGGAAAGCAGAAACACGAGGCAAATGTAAGAGAAGGTGTGTGGTCGAAACACAAGAGTCATAATAGTTTAGAACCTGAATCTGGTGGCAAAAGTGGGAGTGGAAGTGGTAGGATAAGCAATAGCATAACTAGGCCTAATTCAAATTATAGCCTCGGAGAGAAGGTAGTTAGTAGCAGACAAAGGGATTACAATACACAGGGTAAAGGTTCTGGTGGAAATAAGACTGTAGTTAGAAATGAAGTTATGGACACAGGCTTTGGGAGAAGAAATACTGAGATTGAGAGTGTTGTGAGCAGAAGCAGCCCGGAAAATGTCAAACTGAATCGAAACAGTAAGCGTTTCGTTGATAGGGGTTATGATTCTGACAATGTGGAACGAGCTGCGTTCACGAATTTGGAGGATATCAGCAGGTTACAATTTTCACACAAGGAACTGGAGGAGAGAATCCAAAAGCTGGCTAGATTGTTGAATGGTGCAGATATCGATTTGCCTGAATGGTTGTTCTCTAAAGCGATGAGAAGTGCGAAAATCAAATTTAATGACTATTCTATAACTAGGGTTATCATACTCTTGGGAAATCTAGGGAACTGGAAGCGGGTAATACAGGTCATTGAATGGCTTCAAAGGCGTGAGCGTTTCAAATCCAATAAACTAAGGCATATATACACTGCTGCTCTTGATGCCCTCAGAAAGTCAAGGAGACCTGTAGAGGCACTAAATATGTTTAATGCAATGCAGCAACAAATGGCCACATATCCTGATTTAGTAGCTTATCGTAGTATTGCTGTTACTCTTGGACAAGCAGGACATATGAAGGAACTCTTCGATGTGATTGATATTATGCGATCACCGCCAAAAAAGAAGTTCAAAACAGGGCCATTTGAGAAGTGGGACCCAAGGCTGGAGCCAGATAGTGTAGTCTATGATGCAGTCCTTAACGCTTGTGTGAAGGGGAAGCAATGGGAAGGAGCCTTTTGGGTTTTACAGCAGTTAAAGAAGGAAGGCCAACAACCCTCTGCTACAACTTATGGCTTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTGCAAAAGTCTTATATTCCCAATTCATTGACATATAGAGTTCTCGTCAACACACTTTGGAAAGAGGGAAAAACTGATCAGGCTGTATTGACTGTGCAAGAAATGGAAAACCGTGGAATCGTAGGTTCTGCTTCTATTTATTATGACCTAGCTCGATGCCTTTGTGCTGCTGGAAGAAGTCATGAGGCACTGATGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCATGTCTAGACTCTGGAAACATTCAAGAGGGGGCATTTATTTTTGAGAAAATGAAGGAAATTTGTGCTCCGAATCTGGTTACTTTTAACATATTGCTGAAAGCTTACCTGGACCATGGGATGTTTCAAGAAGCTAAAGAGTTGTTTGAGAAGATGTTAGAAAACACAAATCTTCGGAGGGGAAATGCTGATTACAAAATGCTGGTAACGCCAGATATTTACACATTCAACACCATGTTGGATGCGTGTGTTGCAGAGAAGAGATGGGATTATTTTGATGATATATATCTAAGAATGTTCCGCCATGGTTACCACTTCAATGCAAAACGTCATCTTCGAATGGTACTGGAGGCTTCAAGAGCTGGAAAGATAGGGCCTTTGGAGATAACATGGAAGTACTTAGCGAATACAGGTCGCATTCCACCATCTGCTCTGGTGAAGGAGATGTTATGTCTGAAGCTTGAAAAGGATGACTATGTTTCTGCCCTCACATGTATCACCAATAATTCCCCAAAAGACTTGCAGCCATTTTCCAAGTCATCATGGTTGAATCTATTCAAAGACAATTCTCAACGGTTTCAGAAGGATAGGCTTGTTAGACTAATGAATGAGGCTAGCAATGTAGTTTCGAATAGTAGCACAGCAAACCCAATTCTCGTGTATCTAATGGAATCATGCAAAGAGTTTTTATGTGCCAATGACCTTAGTGTAGCTGACAAGGATTCAGTTGGAACCGTATTTGCAGTAGAAAATAAACTGGTAGCATGCTCTAGATGA 2712 0.4086 MGLLSFEINTISPSTFHFAGISSFPSYAIPISPIPLSTNVLNTRVSIKFHPFYSPNLKFVPPLTASSLNDASNVGLISDVVNPKDLEFKPSFDVYLKAMESRTSRKKKRASTTDTTSQKQNVRGRGEEADQKVDRVGEKIDGKEGFAAAKEDGKIIVIYKEEGSSTSDDSVRQRKTKEFKNEHGRKESQIDVKGKQKHEANVREGVWSKHKSHNSLEPESGGKSGSGSGRISNSITRPNSNYSLGEKVVSSRQRDYNTQGKGSGGNKTVVRNEVMDTGFGRRNTEIESVVSRSSPENVKLNRNSKRFVDRGYDSDNVERAAFTNLEDISRLQFSHKELEERIQKLARLLNGADIDLPEWLFSKAMRSAKIKFNDYSITRVIILLGNLGNWKRVIQVIEWLQRRERFKSNKLRHIYTAALDALRKSRRPVEALNMFNAMQQQMATYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGPFEKWDPRLEPDSVVYDAVLNACVKGKQWEGAFWVLQQLKKEGQQPSATTYGLVMEVMFSCGKYNLVHEFFRKLQKSYIPNSLTYRVLVNTLWKEGKTDQAVLTVQEMENRGIVGSASIYYDLARCLCAAGRSHEALMQIDKICKVANKPLVVTYTGLMQACLDSGNIQEGAFIFEKMKEICAPNLVTFNILLKAYLDHGMFQEAKELFEKMLENTNLRRGNADYKMLVTPDIYTFNTMLDACVAEKRWDYFDDIYLRMFRHGYHFNAKRHLRMVLEASRAGKIGPLEITWKYLANTGRIPPSALVKEMLCLKLEKDDYVSALTCITNNSPKDLQPFSKSSWLNLFKDNSQRFQKDRLVRLMNEASNVVSNSSTANPILVYLMESCKEFLCANDLSVADKDSVGTVFAVENKLVACSR 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0043 903 Pfam Pentatricopeptide repeat domain 635 681 IPR002885 -
Lal9g0043 903 Pfam Pentatricopeptide repeat domain 494 543 IPR002885 -
Lal9g0043 903 Gene3D Tetratricopeptide repeat domain 543 652 IPR011990 GO:0005515
Lal9g0043 903 Gene3D Tetratricopeptide repeat domain 653 769 IPR011990 GO:0005515
Lal9g0043 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Lal9g0043 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 700 IPR002885 -
Lal9g0043 903 MobiDBLite consensus disorder prediction 103 136 - -
Lal9g0043 903 MobiDBLite consensus disorder prediction 218 266 - -
Lal9g0043 903 Pfam PPR repeat 719 748 IPR002885 -
Lal9g0043 903 Pfam PPR repeat 569 598 IPR002885 -
Lal9g0043 903 Pfam PPR repeat 414 440 IPR002885 -
Lal9g0043 903 Gene3D Tetratricopeptide repeat domain 353 542 IPR011990 GO:0005515
Lal9g0043 903 MobiDBLite consensus disorder prediction 121 136 - -
Lal9g0043 903 MobiDBLite consensus disorder prediction 165 217 - -
Lal9g0043 903 Coils Coil 328 355 - -
Lal9g0043 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 717 751 IPR002885 -
Lal9g0043 903 MobiDBLite consensus disorder prediction 163 278 - -
Lal9g0043 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Lal9g0043 903 PANTHER OS01G0674700 PROTEIN 70 880 IPR044645 GO:0009658
Lal9g0043 903 TIGRFAM PPR: pentatricopeptide repeat domain 719 751 IPR002885 -
Lal9g0043 903 TIGRFAM PPR: pentatricopeptide repeat domain 672 700 IPR002885 -
Lal9g0043 903 PANTHER OS01G0674700 PROTEIN 70 880 - -
Lal9g0043 903 SUPERFAMILY TPR-like 568 701 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0043 Lal-Chr9 271047 280361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0043 517 769 Glycosyltransferase AT1G05670 20.144 1.74e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0043 - - aprc:113864568 1174.46