Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0037 ATGGCTACTGCTGCAGTTATTGGACTTAGTGGAGGAAAGAGGCTCTTGAGTTCATCTTACCATTATTCAGATATTACAGAAAAGATTTTCTATGGAAGTGATTTTGGATCCACACACTATCAGGTTGCTCCTACAAAATCTGTTATAATTTCTAAAAAGTCATCAAATTATACCCCAACTTTTCCAACATGCAATAAGGAGAAGGAGATTCAGTCCTTCAAGGCTCTTAAGGAACATGTTGATGCTGCCCCCACTATTGCAGATCAATGGTTTGAGGAATATGATAATTCTGATGTCTTAGAGGTGGAAAATTCTGACATGGATAGTTCTATGGATGCACTTCTTCTGCTGCAGAAATCAATGCTGGAAAAGCAATGGAACCTTTCATTTGAAAGGGGGGTGTTAAGTAGGAAGTCGAGAAGAGAAAAAAGCCGTAGGAAAGATACGGTGACTTGTTCTGGTGTATCTGCAAGGCAAAGAAGAATGACTAAGAGGACTCCCAGTATGCAGTTGAGGTCCATAATCAGTCCAGAACTGCTTCAAAACCGGTTGAAGGGCTATGTGAAAGGAGTAGTGAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTGAACCTATCAGAAAAAATAAAAGTTGGGCTTTCCTTAGATGAGCACAAATGCAGCCTGAAGGAAAGACTAGGATGTGAACCCTCAGATGATCAAATTGCATCTTCACTGAAGATTTCATGTGCTGAACTACGAGCAAAAATGATAGAGTGCTCGTTTGCTAGAGAAAGGTTGACTATGAGCAATGTTCGATTAGTCATGTCTATTGCTCAAAAATATGATAACCTGGGTGCTGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAATTCGATTCGTCTAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAGTTGAGAATTCAAGAACATTAAGATTGCCTACTCATTTGCATGAGAGGTTATCTTTGATCCGCAACGCAAAGTTAAGACTAGAAGAGAGAGGCATTACTCCAACTATTGATAGGATTGCGAAAAGCCTTAATATGTCTCAAAAGAAAGTTAAAAATGCTACGGAGGCAATCAATAAAGTTATTTCACTTGATAGGGAAGCATTCCCCTCTTTGAATGGTCTTCCAGGAGAAACTCATCATAGTTACATTGCAGATATCCGCCATGAGAATATCCCGTGGAATGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATTAATGTGACCCTTGTGGAACGAGAACAGGAAATCATTCGTTTTTATTATGGATTGGATAAAGAATGTCTTACATGGGAGGACATAAGTAAACGGATAGGGTTGTCAAGAGAAAGAGTAAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGGTGCCAGGAAGAGAGAGATGGGGGCTATGCTATTGAATTGA 1497 0.4001 MATAAVIGLSGGKRLLSSSYHYSDITEKIFYGSDFGSTHYQVAPTKSVIISKKSSNYTPTFPTCNKEKEIQSFKALKEHVDAAPTIADQWFEEYDNSDVLEVENSDMDSSMDALLLLQKSMLEKQWNLSFERGVLSRKSRREKSRRKDTVTCSGVSARQRRMTKRTPSMQLRSIISPELLQNRLKGYVKGVVSEELLSHAEVVNLSEKIKVGLSLDEHKCSLKERLGCEPSDDQIASSLKISCAELRAKMIECSFARERLTMSNVRLVMSIAQKYDNLGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRLEERGITPTIDRIAKSLNMSQKKVKNATEAINKVISLDREAFPSLNGLPGETHHSYIADIRHENIPWNGVDEWALKDEVNKLINVTLVEREQEIIRFYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHGARKREMGAMLLN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0037 498 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 497 - -
Lal9g0037 498 Pfam Sigma-70 region 3 339 407 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 Gene3D RNA Polymerase Primary Sigma Factor 63 330 - -
Lal9g0037 498 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 256 485 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 Gene3D - 331 382 IPR036388 -
Lal9g0037 498 Gene3D - 415 493 IPR036388 -
Lal9g0037 498 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 497 - -
Lal9g0037 498 PRINTS Major sigma-70 factor signature 284 297 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 PRINTS Major sigma-70 factor signature 308 316 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 PRINTS Major sigma-70 factor signature 437 449 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 PRINTS Major sigma-70 factor signature 457 472 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 PRINTS Major sigma-70 factor signature 472 483 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 ProSitePatterns Sigma-70 factors family signature 1. 284 297 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 414 489 IPR013324 -
Lal9g0037 498 Pfam Sigma-70 region 2 263 329 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 183 330 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 Pfam Sigma-70, region 4 436 485 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lal9g0037 498 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 332 388 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0037 Lal-Chr9 249510 260442 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0037 K03086 - gmx:100801884 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0037 9 249510 260442 Lal9g0037 9 249510 260442 ECH