Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0005 ATGAAGGAATCAATGGGAACGGAAACGTTATTGGAGGACATTGAGGATTTGATGATTGGCGGCGCCACCGGTTTCCGCTTGCCAATAGCGTCTAAAACTGTTGCCGTTGCTCCTTCAACTAAAAAGAGGAATCAACCACATGACTCTTCAATTCCTGGCACTCAGACTATTTACATCAAGACCTTTGGGTGCTCCCATAACCAGAGTGATAGTGAATACATGGCTGGTCTCCTTTCCGCCTTTGGCTATTCCTTATCTGATAATCCTGACCAATCAGATCTCTGGCTCGTCAACACTTGCACTGTCAAATCCCCTAGTCAGTCTGCAATGGATACCATCATCTCCAGAGCCAAATCTTCTAATAAACCACTCGTTGTCGCCGGCTGTGTCCCTCAAGGAAGTCGTCACGTCAAAGAGCTTCAAGGTATCAGCATTGTTGGCGTTCAGCAAATTGACCGCGTTGTTGAAGTCGTTGAGGAGACTTTAAAAGGGCATGAGGTCCGCCTCTTGACCCGTACCACCCTCCCAGCACTTGACCTTCCTAAGGTCAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACTAAGCATGCTCGTGGTCACTTAGGCAGTTACACTGTACAAAGCCTTGTAGGGCGTGTAAAATCTGTCATATCCGATGGAGTTAAAGAGATATGGCTCAGCAGTGAAGACACCGGAGCATATGGTCGTGACCTTGGTGTCAATCTTCCAACTTTATTGAATGCCTTAGTAGCTGAACTACCAGCTGATACTAGCACAATGCTCCGTATTGGAATGACTAATCCACCTTTCATCCTTGAGCACCTCAAAGAAATAGCACAGATTTTGCGGCATCCATGTGTGTACTCATTTTTGCATGTACCGGTTCAGTCTGGAAGTGATACTATTTTGAGTGCTATGAATCGGGAATATACCGTGAGTGAGTTCAAGACTGTTGTAGATACCTTAACTGAGCTTGTGCCAGGGATGCAGATTGCCACTGACATAATATGTGGATTTCCTGGTGAGACGGATGAAGATTTTGAACAAACTGTCAATCTTGTTAATGAGTACCAGTTCCCACAAGTTCACATTTCACAATTTTATCCACGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTAGTGAAGAGACGAAGCCGTGAGTTGACAAATGTCTTTGAAGCCTTCACACCATATGATGGGATGGAAGGCAGGGTTGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTTCATTTGGTTGGTCATACGAAGGGATATATACAAGTTCTTATAATTGCTTCAGACAATTTGCTGGGAACATCAGCTATGGTTAAGATAACATCTGTAGGAAGGTGGTCAGTATTTGGAGAAGTGATTGAGATGGTCAGCTATAGTGACCATAAAGTTTCATGCAAGCAGATTCCTAATCAGGATGTGCCTTCTCTCTGCTGTAATCCAGCCAAGAATGGTGGACTCTCAGAAAGGCCGGAATGTTGTGCTTCTGGAAATGACAGCTGCTGTGGTCAGAGTACGCTGGAGAAGAGCGATGACTCAAGAAGCTCTGTTGTGCCGCAGAATCAAAACAGTAGAAGTTTTGTTGGATGGGTACTGAGGAAGCGGAAGCATCTGCTGCAGAGAGGGACAGCGAATGACCTTGACTCAGCCTCAGGATCTATTTTGAAGCACGAAGGGGACCATGGGAGCATGACGAAGTGGGACTTTGTTGATAAAGCTCTTTTGGGTGGAATATCTATCAGCATCTTCACTATTATTGCTTTAGTAGTAGCTCTTAAGTTTAGTGTTTTTTGGTCCAAGTAA 1875 0.4437 MKESMGTETLLEDIEDLMIGGATGFRLPIASKTVAVAPSTKKRNQPHDSSIPGTQTIYIKTFGCSHNQSDSEYMAGLLSAFGYSLSDNPDQSDLWLVNTCTVKSPSQSAMDTIISRAKSSNKPLVVAGCVPQGSRHVKELQGISIVGVQQIDRVVEVVEETLKGHEVRLLTRTTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVQSLVGRVKSVISDGVKEIWLSSEDTGAYGRDLGVNLPTLLNALVAELPADTSTMLRIGMTNPPFILEHLKEIAQILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFKTVVDTLTELVPGMQIATDIICGFPGETDEDFEQTVNLVNEYQFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFEAFTPYDGMEGRVERIWITDIASDGVHLVGHTKGYIQVLIIASDNLLGTSAMVKITSVGRWSVFGEVIEMVSYSDHKVSCKQIPNQDVPSLCCNPAKNGGLSERPECCASGNDSCCGQSTLEKSDDSRSSVVPQNQNSRSFVGWVLRKRKHLLQRGTANDLDSASGSILKHEGDHGSMTKWDFVDKALLGGISISIFTIIALVVALKFSVFWSK 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0005 624 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 57 478 IPR006466 GO:0035598|GO:0035600
Lal9g0005 624 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 55 163 IPR013848 GO:0035596|GO:0051539
Lal9g0005 624 ProSiteProfiles Radical SAM core domain profile. 184 417 IPR007197 GO:0003824|GO:0051536
Lal9g0005 624 Gene3D - 56 175 IPR038135 -
Lal9g0005 624 Pfam Radical SAM superfamily 195 367 IPR007197 GO:0003824|GO:0051536
Lal9g0005 624 ProSiteProfiles TRAM domain profile. 417 479 IPR002792 -
Lal9g0005 624 Pfam Uncharacterized protein family UPF0004 57 135 IPR013848 GO:0035596|GO:0051539
Lal9g0005 624 SFLD Radical SAM 153 403 IPR007197 GO:0003824|GO:0051536
Lal9g0005 624 ProSitePatterns Methylthiotransferase radical SAM domain signature. 192 212 IPR020612 GO:0051539
Lal9g0005 624 SMART MiaB 188 412 IPR006638 GO:0003824|GO:0051536
Lal9g0005 624 SFLD B12-binding domain containing 153 403 - -
Lal9g0005 624 Gene3D tm_1862 like domain 186 416 IPR023404 -
Lal9g0005 624 SUPERFAMILY Radical SAM enzymes 177 412 - -
Lal9g0005 624 CDD Radical_SAM 192 396 - -
Lal9g0005 624 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 56 473 IPR005839 GO:0006400|GO:0016740|GO:0051539
Lal9g0005 624 PANTHER RADICAL SAM PROTEINS 12 496 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0005 K15865 - gmx:100798865 980.319