Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1551 ATGTTTATTTCCCACAGACCTCGTCAAATATCACTCTTCTCCTTTCATTTAACCCTCATTAAATCATACCCTTTTCCATCATCTATACGACGTCGTTTCCTCTCCTCTTCTGAACCTTCATGGCTATCTCTACCTGGTAACCCACTCATACACTGGCCCTCACTTCCACCACCGAACCCACCCAACCCGAACCCGAACCCAAACCCGAAACCCGAATCTTGTTCCAACAATCACTTCTCTCTAATTTCTAATCTCTTCACTGACCCTTCAATCTCTCCCGGTTCGGTTCTCCATGAAAAACTCGACCGGTCCGGTATCGAACCGGGTTTATCACTACTTCATTCCGTTTTTGAACATTTCGGTTCATCACCCAAACTTCTTCACTCGCTGTTTCTTTGGGCTTTGAACAGACCCGGGTTTAGACCTGACCCGAAACTGTTTGACTCAGTGGTCAACGTTCTTGCGAAATCGAGGGAGTTTCACTCTGCTTGGAATCTGATACGGGATCATATAGATGATGAAGGAGAACAAAGATTGGTTTCTATTGCTACATTTGCTACCTTGATTCGACGTTATGCTCGTGCAGATTATAATGAGATAACCCATGTTTGGTTTATCCATGTCATTGGACCTCGGGCCCTAATTTTCCTGTATGGTATGCGCCAACCTGCAATTCGAACATTTGAGTTTGCAAAAGATCATACATCAATTCTGGATTCTGGATCAGAAATGAGTTTATTTGGGATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTAAGGGAAGCTTCAGATTATTTCCTCCGGAGAAAGAAAATGGATCCGAGTTGGGTTCCATCAATTCGGATTTATAACATACTGTTAAATGGATGCTTTCGATCAAGGAAACTCAAGCAGGGTGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTAAGGCCAAGTGTTGTAACATATGGCACACTCGTGGAAGGATATTGCCGGATGCGTCGGGTTGAAAAGGCACTTGAAATGGTTGATGATATGGCCAAAGAAGGAATTGAAGCGAATGCAATAGTTTATAATCCAATAATTGATGCATTAGCCGAAGCTGGGAAATTTAAGGAGGCTTTGGGTATGGTGGAGCGTTTTCATGTTTTAGAAATCGGCCCGACCGAGTCGACATACAATTCTCTGGTGAAAGGGTTTTGTAAGGCAGGAGACGTTGAAGGTGCCAGTAAGATTCTGAAAACGATGATAAATAGGGGTTTCGTCCCGAGTCCTACCACATATAGCTACTTCTTCAGGTACTTTTCACGATGCGGAAAAATTGAGGAGGGAATGAACTTGTATACCAAATTGAATGAATCTGGTTATACCTTGGATCGACTAACTTACCATCTTCTGGTGAAGATGTTATGTGAAGAGGAGAGGTTAAATTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCAGAAAGGATATGACATGGACCTGGCTACGAGTACAATGTTGGTTCATTTACTTTGCAAAATGCATAGATTGGAAGAGGCTTTTGTGGAATTTGAGGACATGATCCGTAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGAATGCCGAGTTAAAGAAAAAAGGCATGACGGAAATGGCTCAAAGACTTTGTAAATTGATGTCTTCTGTTCCACATTCTACTAAATTGCCAAATACTTATGAGCAAGAAAGAGATGATGCATATGCACGAAGAAAATCTATAATTCAGAAAGCCAAAGCATTTTCTGATATGCTGAAGGATTGTAAGGACCCTAGAGAACTTGATAAGTATAGAAGAAATTCCTCAGAAAATGCTGTCTCTGAACCAAAAACTATTAGATAA 1857 0.4152 MFISHRPRQISLFSFHLTLIKSYPFPSSIRRRFLSSSEPSWLSLPGNPLIHWPSLPPPNPPNPNPNPNPKPESCSNNHFSLISNLFTDPSISPGSVLHEKLDRSGIEPGLSLLHSVFEHFGSSPKLLHSLFLWALNRPGFRPDPKLFDSVVNVLAKSREFHSAWNLIRDHIDDEGEQRLVSIATFATLIRRYARADYNEITHVWFIHVIGPRALIFLYGMRQPAIRTFEFAKDHTSILDSGSEMSLFGILLDSLCKEGSVREASDYFLRRKKMDPSWVPSIRIYNILLNGCFRSRKLKQGERLWEEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMVDDMAKEGIEANAIVYNPIIDALAEAGKFKEALGMVERFHVLEIGPTESTYNSLVKGFCKAGDVEGASKILKTMINRGFVPSPTTYSYFFRYFSRCGKIEEGMNLYTKLNESGYTLDRLTYHLLVKMLCEEERLNLAVQVSKEMRQKGYDMDLATSTMLVHLLCKMHRLEEAFVEFEDMIRRGIVPQYLTFQRMNAELKKKGMTEMAQRLCKLMSSVPHSTKLPNTYEQERDDAYARRKSIIQKAKAFSDMLKDCKDPRELDKYRRNSSENAVSEPKTIR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1551 618 Pfam PPR repeat 353 376 IPR002885 -
Lal8g1551 618 Pfam PPR repeat 247 268 IPR002885 -
Lal8g1551 618 Pfam PPR repeat 494 522 IPR002885 -
Lal8g1551 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Lal8g1551 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Lal8g1551 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Lal8g1551 618 MobiDBLite consensus disorder prediction 53 70 - -
Lal8g1551 618 Gene3D Tetratricopeptide repeat domain 242 424 IPR011990 GO:0005515
Lal8g1551 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Lal8g1551 618 MobiDBLite consensus disorder prediction 597 618 - -
Lal8g1551 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Lal8g1551 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Lal8g1551 618 MobiDBLite consensus disorder prediction 53 74 - -
Lal8g1551 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Lal8g1551 618 Gene3D Tetratricopeptide repeat domain 432 598 IPR011990 GO:0005515
Lal8g1551 618 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Lal8g1551 618 TIGRFAM PPR: pentatricopeptide repeat domain 388 420 IPR002885 -
Lal8g1551 618 TIGRFAM PPR: pentatricopeptide repeat domain 495 524 IPR002885 -
Lal8g1551 618 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Lal8g1551 618 TIGRFAM PPR: pentatricopeptide repeat domain 317 350 IPR002885 -
Lal8g1551 618 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 90 196 - -
Lal8g1551 618 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 214 613 - -
Lal8g1551 618 Pfam PPR repeat family 279 328 IPR002885 -
Lal8g1551 618 Pfam PPR repeat family 384 430 IPR002885 -
Lal8g1551 618 PANTHER LEAF PROTEIN-LIKE 90 196 - -
Lal8g1551 618 PANTHER LEAF PROTEIN-LIKE 214 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1551 Lal-Chr8 19850328 19854872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1551 246 577 Miscellaneous Gene Families AT4G11690 27.642 1.58e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1551 - - gmx:100793484 818.535