Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1524 ATGGCAACTACTACATCTAGTGCTTATGAACCAAAACATATCCTCATAACTGGTGCAGCTGGTTTCATAGCCTCTCATGTCACTACAAGGCTAATTAAAAAGTACCCTAGCTACAAGATTGTAGCTCTTGATAAGCTAGATTATTGTTCCACTTTCAAGAATCTTCAACAATGCACTTCATCAAAAAACTTCAAATTTGTGAAGGCTGATATAGCTAGTGCTGATATTGTGAATCATCTCTTAATGGAAGAGAAAATAGACACAATTATGCACTTTGCTGCACAAACCCATGTAGATAATTCCTTTGGTAACTCCATGGAATTCACCTACAACAATATATATGGTACACATGTGCTTCTTGAAGGTTGTAGGGTCACTAATCTTGTTAAAAGATTCATCCATGTTAGCACTGATGAAGTATATGGTGAAACTAAGTTAGATACTAATGTTGGTAACCATGAGGCATCTCAGCTTCTTCCTACAAATCCTTACTCAGCAACAAAAGCTGGTGCAGAAATGTTGGCCATGGCATACCATAGATCCTATGATCTTCCAATTATAACCACTAGAGGAAATAATGTGTATGGTCCTAACCAATACCCAGAAAAGCTTGTTCCTAAGTTAATTCTTAGGGCAATGAAAGGTGAAAAATTTCCAATCCATGGTGATGGATTCAATGTAAGGAGCTACCTTTATTGTAGTGATGTTGCTGAAGCATTTGATGTTATACTTCATAAAGGAGAGATTGGAGAAATCTACAACATTGGAACAAAGAAAGAAAGGAGTGTGTTAGATGTAGCTAGTGATATATGCAAACTCTTTAAATTGGACCCTAAAGAATCTATTGAATTTGTTAAAGATAGACCCTTTAATGATAAGAGATATTTCTTAGATGATCAAAAGCTAAAGCAACTTGGTTGGGAAGATAGAACTTGTTGGGAAGAAGGACTTAAAATGACAATTGAATGGTACAAAAAGAACCCTAATTGGTGGGGTGATGTAACTACTGCTTTAAACCCACATCCACATTTCTCAGCTATAAATCTCTGTGATGAACCACAATGGTCATTTCAATATGGATATTCAAGGCTTGTTAGGTCATTTACTGAAATTGGTAGAACTAATAATAAATCTGAAGGACAATTCAAATTCCTTATATATGGTAAAACAGGTTGGATTGGAGGGTTATTAGGAAAGCTTTGTGATGAAGAAGGAATTGATTGGGAATATGGAAAAGGAAGATTAGAAGATAAGAAATCATTGTTAGATGATATATTTAGGGTTATGCCAAGCCATGTGTTAAATGCAGCTGGTGTTACTGGAAGACCTAATGTTGATTGGTGTGAATCACATAAAGTTGAGACAATAAGAACAAATGTTGTTGGAACTTTAACTCTTGCTCATATTTGTAAGGAACATGGGTTATATATGATGAATTTTGCAACAGGTTGTATATTTGAGTATGATAAAGAACATCCTCTAGGATCTGGCATTGGGTTTAAGGAGGAGGATATGCCAAATTTTATTGGATCTTTCTATTCTAAGACCAAGGCTATGTTCTTCACTTTCCCATACCCCAGTAACAATGGAACTCTCCAGTGGTTGGAGGCTCCTTGTCGCAGTCTTGTCCAACAAGTGGTATCAGAGCCGATGGTTCGGCTGGAACATGGTGGAATTACGGGGGAGCGGACTGGAAAGTGTGTGGTGGAGGATCTCCTTAAAGAATATGATAATGTATGCACACTGAGAGTTAGAATGCCAATATCATCAGATCTTAACAATCCAAGAAACTTCATCACAAAGATTAGTCATTACAACAAGGTAGTAAACATACCCAATAGCATGAGTGTGTTAGATGAACTTTTACCTATAGCAATTGAAATGGCTAAGAGGAACTTAAAAGGGATATGGAATTTCACCAACCCAGGAGTTATAAGTCACAATGAGATATTAGAGTTGTATAAGAACTACATAGACCCTCAATTTAAATGGGAAAATTTTAATTTGGAAGAACAAGCTAAGGTAATAGTTGCTCCAAGGAGTAACAATGATATGGATTCCTTCAAACTCAAGAAAGAGTTCCCAAATTTGTTACCCATTAAAGATTCAATTATCAAGTTTGTCTTTGAGCCTAATAAGAAAACTTGA 2148 0.3608 MATTTSSAYEPKHILITGAAGFIASHVTTRLIKKYPSYKIVALDKLDYCSTFKNLQQCTSSKNFKFVKADIASADIVNHLLMEEKIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEGCRVTNLVKRFIHVSTDEVYGETKLDTNVGNHEASQLLPTNPYSATKAGAEMLAMAYHRSYDLPIITTRGNNVYGPNQYPEKLVPKLILRAMKGEKFPIHGDGFNVRSYLYCSDVAEAFDVILHKGEIGEIYNIGTKKERSVLDVASDICKLFKLDPKESIEFVKDRPFNDKRYFLDDQKLKQLGWEDRTCWEEGLKMTIEWYKKNPNWWGDVTTALNPHPHFSAINLCDEPQWSFQYGYSRLVRSFTEIGRTNNKSEGQFKFLIYGKTGWIGGLLGKLCDEEGIDWEYGKGRLEDKKSLLDDIFRVMPSHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLAHICKEHGLYMMNFATGCIFEYDKEHPLGSGIGFKEEDMPNFIGSFYSKTKAMFFTFPYPSNNGTLQWLEAPCRSLVQQVVSEPMVRLEHGGITGERTGKCVVEDLLKEYDNVCTLRVRMPISSDLNNPRNFITKISHYNKVVNIPNSMSVLDELLPIAIEMAKRNLKGIWNFTNPGVISHNEILELYKNYIDPQFKWENFNLEEQAKVIVAPRSNNDMDSFKLKKEFPNLLPIKDSIIKFVFEPNKKT 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1524 715 Gene3D - 205 327 - -
Lal8g1524 715 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 5 713 - -
Lal8g1524 715 Pfam RmlD substrate binding domain 383 517 IPR029903 -
Lal8g1524 715 Gene3D - 563 715 - -
Lal8g1524 715 Gene3D - 372 521 - -
Lal8g1524 715 CDD dTDP_GD_SDR_e 12 329 IPR005888 GO:0008460|GO:0009225
Lal8g1524 715 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 5 713 - -
Lal8g1524 715 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 338 IPR036291 -
Lal8g1524 715 Pfam GDP-mannose 4,6 dehydratase 15 320 IPR016040 -
Lal8g1524 715 Gene3D - 14 318 - -
Lal8g1524 715 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 692 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1524 Lal-Chr8 19558470 19561505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1524 14 324 Miscellaneous Gene Families AT4G00110 26.866 6.13e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1524 K12450 - gmx:100776241 1169.45