Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1523 ATGTCTCGTGTGTATGTTGGTAACTTGGATTCAAGAGTGACTGAGAGAGAGCTTGAAGATGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGGCGACCACCTGGTTATGCTTTTATCGACTTTGACGATCGCAGAGACGCACAGGATGCTATTCGTGAGTTAGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAGAACTGGTGGTGGTGGTGGTGGTCGTGGAGGTGGTGGTGGAGGAGGAGGTGGTCGTGGTCGTTCTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGGGAACCTGGTCATTTTGCTCGTGAATGCCGCTCTCGTGGCGGTTCAGGGAGACACCGTAGCCGTAGTCCACCTCGATTTCGTAGGAGCCCAAGTTATGGACGAAGGAGTTATAGTCCTCGTGCGCGGTCTCCTAGGCGTCGCAGTTTGTCTCCCCGTGGACGCAGCTACAGCCGGTCGCCTCCTATCCGTGGACGTGAGGAGCTACCATATTCTAATGGAAATGGCCTGAGGGAACGACGCCGAAGCAGAAGTTAA 570 0.5246 MSRVYVGNLDSRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRTGGGGGGRGGGGGGGGGRGRSGGSDLKCYECGEPGHFARECRSRGGSGRHRSRSPPRFRRSPSYGRRSYSPRARSPRRRSLSPRGRSYSRSPPIRGREELPYSNGNGLRERRRSRS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1523 189 SUPERFAMILY Retrovirus zinc finger-like domains 93 118 IPR036875 GO:0003676|GO:0008270
Lal8g1523 189 SMART rrm1_1 3 69 IPR000504 GO:0003723
Lal8g1523 189 SUPERFAMILY RNA-binding domain, RBD 3 96 IPR035979 GO:0003676
Lal8g1523 189 Gene3D - 1 98 IPR012677 -
Lal8g1523 189 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Lal8g1523 189 Gene3D - 99 154 - -
Lal8g1523 189 ProSiteProfiles Zinc finger CCHC-type profile. 100 116 IPR001878 GO:0003676|GO:0008270
Lal8g1523 189 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Lal8g1523 189 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 181 - -
Lal8g1523 189 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 181 - -
Lal8g1523 189 MobiDBLite consensus disorder prediction 66 100 - -
Lal8g1523 189 CDD RRM_SRSF3_like 3 71 - -
Lal8g1523 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Lal8g1523 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Lal8g1523 189 MobiDBLite consensus disorder prediction 112 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1523 Lal-Chr8 19545363 19548886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1523 K12896 - gmx:100796961 233.417