Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1515 ATGAACAAGGGGAATCATTTTGATGGAAAGAACCAAGTTGATGAAACTGCTGAAGCTGCAAATTCAGGAAGTCAACCCTGCTGCACTTTCTGCTCGGCGGAAAAAAATAGCTGCCGAATTGTACGCTCGGAAACAAAATTAATGAATATTATGATAGACAAAGGAAAACCTGAAGAAGCTAATGTCATTTTTGAAAATCTGATTGAAGGAGGGCACCAGCCATCTTTAGTAACATACACGACCGTGTTAAACGCCTTCACCATTCAAAAGTGCTTCAAGCCTATACAGTCCATTGTCTCACAGATGAAAGAAAAAGGAATCAAGCCTGATTCAGTATTTTTTAATGCTCTTATAAATGCATTTGCTGAATCCGGGAACATGGAGGATGCCATGAAAGCTTTCGAGAATATGAAAGAAAGTGGACTGAGACCTAGCACCAGCACTTATAACACCTTAATAAAAGGGTATGGGATTGCAGGCAAGCCTGACGAGTCGATGAAGTTGCTAGACCTGATGTTGACTGATGGAAACGTGAAACCCAATCTCAAGACGTACAATTTGCTTGTCAGAGCATGGTGTAAACTGCAAAAGATGTTCATGGCATGGAATATACTTAATAAGATGTCTGCTTCTGGAATGAAACCGGATGCTGTTACTTTCAACACTATAGCAACAGCTTATGCTCAGAATGGAGAGACTGTTCAGGCTGAAGCAATGATTTTAGAGATGCAGAGGAATGGTTTGGAACCCAATGAGAGAACTTGCACCATCATCATGTGCGGATATTGTAGAGAAGGTAAAATGAAGGAAGCGATAAGGTTTGTACACAGGATGAAGGATCTGGGGCTGCAACCTAATCTTGTTGATTTTAACTCCTTGGTTAATGGTTTTGTCGACGTGATGGATATAGATGGCATTGATGAGGTTTTAAAGTTGATGGGAGAATTTCAGATCCAACCAGACTTGATATCATATAGCACTATAATGAATGCATGGAGCCAAGCTGGATACTTAGAAAAATGCAAGGAAGTCTTCAATAACATGTTGAAATCTGGTGTAGAACCAGATGCACATGTTTACGGAATTCTTGCTAAAGGTTATGTGCGAACCCAAGAAACCGAAAAGGCTGAAGAGCTACTAACTGCTATGGTTAAACCAGGTATCCAACCAACCGTTGTTACATTTACAACTGTCATAAGCGGATGGTGCAGTGCTGGCAGAATGGAAGATGCTATGAGGGTTTTCAACAAGATGTGTGAATCCGGTGTTTCTCCTAATTTGAATACTTTCGAAACCTTAATCTGGGGATATGCAGAAGCAAGACAGCCATCAAAAGCAGAAGGAATACTCCGAATAATGGAAGATTTTCACGTTGTACCCAAGAAATCTACAATGTTGCTTGTTGCAGAAGCTTGGTGTTTAGCTGGATTAGTAGAAGAAGCAAATAGGGTACTAAGTGCTGTAAAAACAAAGCAGATATCAAATTCAATAGAAGAAGAGGAAAATATACCATCTGAAGGTTTGAAGAATGTTAAACAAAAGTCATATATCAATGCTCCTTTAGGTACTCTCTTACATGTCCCATCTATATGTATCAATGAAGGTTCAGTATTAGCATCTAGAAAAAATAGAAGGCTCCTCAGAGATGCTAATTTGGAGATTTCATTGAACTCAACAAAACTCAAGTGTCACTCTCAAATTTGTAGATTTGGTGAAGGATTTTCCATTATGTGTCAAAAACAGTTCCAATGTCAGCATGGTACATACCAACTGGCAAATTCATGTACAGCAGTATTCTTGAACTGA 1806 0.3926 MNKGNHFDGKNQVDETAEAANSGSQPCCTFCSAEKNSCRIVRSETKLMNIMIDKGKPEEANVIFENLIEGGHQPSLVTYTTVLNAFTIQKCFKPIQSIVSQMKEKGIKPDSVFFNALINAFAESGNMEDAMKAFENMKESGLRPSTSTYNTLIKGYGIAGKPDESMKLLDLMLTDGNVKPNLKTYNLLVRAWCKLQKMFMAWNILNKMSASGMKPDAVTFNTIATAYAQNGETVQAEAMILEMQRNGLEPNERTCTIIMCGYCREGKMKEAIRFVHRMKDLGLQPNLVDFNSLVNGFVDVMDIDGIDEVLKLMGEFQIQPDLISYSTIMNAWSQAGYLEKCKEVFNNMLKSGVEPDAHVYGILAKGYVRTQETEKAEELLTAMVKPGIQPTVVTFTTVISGWCSAGRMEDAMRVFNKMCESGVSPNLNTFETLIWGYAEARQPSKAEGILRIMEDFHVVPKKSTMLLVAEAWCLAGLVEEANRVLSAVKTKQISNSIEEEENIPSEGLKNVKQKSYINAPLGTLLHVPSICINEGSVLASRKNRRLLRDANLEISLNSTKLKCHSQICRFGEGFSIMCQKQFQCQHGTYQLANSCTAVFLN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Lal8g1515 601 Pfam PPR repeat family 215 264 IPR002885 -
Lal8g1515 601 Pfam PPR repeat family 390 438 IPR002885 -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Lal8g1515 601 Pfam PPR repeat 184 212 IPR002885 -
Lal8g1515 601 Pfam PPR repeat 359 387 IPR002885 -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Lal8g1515 601 Gene3D Tetratricopeptide repeat domain 124 263 IPR011990 GO:0005515
Lal8g1515 601 Gene3D Tetratricopeptide repeat domain 264 384 IPR011990 GO:0005515
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Lal8g1515 601 PANTHER OS01G0228400 PROTEIN 2 601 - -
Lal8g1515 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Lal8g1515 601 SUPERFAMILY HCP-like 119 422 - -
Lal8g1515 601 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Lal8g1515 601 TIGRFAM PPR: pentatricopeptide repeat domain 114 145 IPR002885 -
Lal8g1515 601 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Lal8g1515 601 TIGRFAM PPR: pentatricopeptide repeat domain 254 286 IPR002885 -
Lal8g1515 601 TIGRFAM PPR: pentatricopeptide repeat domain 148 181 IPR002885 -
Lal8g1515 601 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Lal8g1515 601 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Lal8g1515 601 Pfam Pentatricopeptide repeat domain 97 157 IPR002885 -
Lal8g1515 601 Pfam Pentatricopeptide repeat domain 275 332 IPR002885 -
Lal8g1515 601 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 601 - -
Lal8g1515 601 Gene3D Tetratricopeptide repeat domain 30 123 IPR011990 GO:0005515
Lal8g1515 601 Gene3D Tetratricopeptide repeat domain 385 460 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1515 Lal-Chr8 19451485 19455866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1515 47 503 Glycosyltransferase AT1G05670 23.965 5.98e-50 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1515 K17710 - gmx:100779093 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1515 8 19451485 19455866 Lal8g1515 8 19451485 19455866 ECH