Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1112 ATGGTTGCTTCTCTTGCATCAATGGGGCTGAAACCGAAGAAGAACGATGTCGAATCAAGATCGAAGTGTTGCAACCCGGTGAAGAAGCAAGGGCCAGTGACAATGGATCATGTTTTGATGGCTTCACAAGAGACAAGGGAAGCAAGGGAAATGAGAATTCAAATTCTTTTTGGGTTCTTTGATAAGGAGAATTGTGGTTACTTAGATTATGCTCACATTGAAGCTGGTCTCTTAGCTCTTCAGATACCCACTGAGTATAAGTATGCAAAAGATTTGTTCAATGCTTGTGATACAAACAATGATGGGCATGTTGATTATCAAGAGTTCAAGAGGTATATGGATAACAAGGAAATCGAGCTTTATCGAATATTTCAGGCCATTGATGTTGAGCATAATGGATGTATTTTGCCAGAGGAGCTATGGGAGGCACTTGTTAGTTCAAGAAATAACTATGCTTATATTATGATACGATACGATTGTGAGGTATGGGACTTGAGCCCCACATTGAAAAATAAGCGGCATTGGAATGAGCCTCACTCGGGGCTGGTCAAAAGGCTAGTGTATGGTCAGCCTGTAATGCACTGGGGTTCGCAGAGGCTTGGGGGATGGATTCAGATTGATGATGAGGAACTCGCTCATTTTGTCGAGCGTGTTGATAAGGATAATGATGGGGTTATAACATTTGGAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACTATTGAGAACATTTACCATTATTTGGAGCGGATATGCATGGTTGATATTGGGGAACACAGCGTTATTCCAGCGGGCATTAGTAAGCACCTTCATGCAAGTAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCTGCATCACGCACCGCAACTGCACCTCTTGATCGTCTAAAAGTTGTATTGCAAGTCCAAACAAAACGAGCTCATATAATGCCTGCGGTAAAGGATATATGGAAAGAAGGCCGTTTCCTAGGATTTTTTCGGGGCAATGGCTTAAATGTTCTTAAGGTGGCCCCTGAGAGTGCCATTAGATTTTATACCTATGAGATGATGAAGACCTTCATAGCGAATGCCAAAGGAGAAGAGGCAAAGGCTGATGTTGGAGCTATCGGGAGGCTGTTTTCTGGTGGTATAGCTGGCGCTGTAGCTCAAACAGCAATATATCCGATGGATCTTGTTAAAACACGACTACAAACCTATGCGTGTGAAAGTGGAAGAATTCCTAGTCTTGGAACTCTGTCAAAAGATATATTAGTCCAGGAAGGACCGCGAGCATTTTATAGGGGATTGGTTCCTTCTATTCTTGGCATTATCCCATATGCTGGCATAGATCTTGCTGTGTACGAAACCTTTAAGGATATGTCCAAGAAGTACATTCTTCACGACGGAGAGCCTGGTCCTCTCATACAATTAGGATGTGGGACGGTATCGGGAGCCCTGGGAGCAACATGTGTTTATCCACTGCAGGTAGTTAGAACAAGAATGCAGGCTCAATCCTGTTATAAGGGAATGGGTGATGTATTCAGGAAAACCTTGGAACATGAAGGTTTTAGGGGATTCTACAAAGGAATATTTCCTAACTTGCTCAAAGTAGTACCTTCTGCAAGTATCACTTATATGGTTTATGAGTATATGAAAAAAGGCTTGGATTTGGAATGA 1665 0.4276 MVASLASMGLKPKKNDVESRSKCCNPVKKQGPVTMDHVLMASQETREAREMRIQILFGFFDKENCGYLDYAHIEAGLLALQIPTEYKYAKDLFNACDTNNDGHVDYQEFKRYMDNKEIELYRIFQAIDVEHNGCILPEELWEALVSSRNNYAYIMIRYDCEVWDLSPTLKNKRHWNEPHSGLVKRLVYGQPVMHWGSQRLGGWIQIDDEELAHFVERVDKDNDGVITFGEWRDFLLLYPHEATIENIYHYLERICMVDIGEHSVIPAGISKHLHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTKRAHIMPAVKDIWKEGRFLGFFRGNGLNVLKVAPESAIRFYTYEMMKTFIANAKGEEAKADVGAIGRLFSGGIAGAVAQTAIYPMDLVKTRLQTYACESGRIPSLGTLSKDILVQEGPRAFYRGLVPSILGIIPYAGIDLAVYETFKDMSKKYILHDGEPGPLIQLGCGTVSGALGATCVYPLQVVRTRMQAQSCYKGMGDVFRKTLEHEGFRGFYKGIFPNLLKVVPSASITYMVYEYMKKGLDLE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1112 554 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Lal8g1112 554 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 61 147 - -
Lal8g1112 554 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 203 551 - -
Lal8g1112 554 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Lal8g1112 554 ProSiteProfiles Solute carrier (Solcar) repeat profile. 369 456 IPR018108 -
Lal8g1112 554 Gene3D Mitochondrial carrier domain 269 551 IPR023395 -
Lal8g1112 554 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
Lal8g1112 554 Pfam EF hand 90 113 IPR002048 GO:0005509
Lal8g1112 554 ProSiteProfiles Solute carrier (Solcar) repeat profile. 467 550 IPR018108 -
Lal8g1112 554 SUPERFAMILY Mitochondrial carrier 271 547 IPR023395 -
Lal8g1112 554 PANTHER SOLUTE CARRIER FAMILY 25 61 147 - -
Lal8g1112 554 PANTHER SOLUTE CARRIER FAMILY 25 203 551 - -
Lal8g1112 554 SMART efh_1 88 116 IPR002048 GO:0005509
Lal8g1112 554 SMART efh_1 119 147 IPR002048 GO:0005509
Lal8g1112 554 SMART efh_1 210 238 IPR002048 GO:0005509
Lal8g1112 554 Gene3D - 194 261 - -
Lal8g1112 554 Pfam EF hand 217 234 IPR002048 GO:0005509
Lal8g1112 554 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lal8g1112 554 MobiDBLite consensus disorder prediction 1 22 - -
Lal8g1112 554 Gene3D - 23 161 - -
Lal8g1112 554 Pfam Mitochondrial carrier protein 469 551 IPR018108 -
Lal8g1112 554 Pfam Mitochondrial carrier protein 272 359 IPR018108 -
Lal8g1112 554 Pfam Mitochondrial carrier protein 369 459 IPR018108 -
Lal8g1112 554 PRINTS Mitochondrial carrier protein signature 278 291 IPR002067 GO:0055085
Lal8g1112 554 PRINTS Mitochondrial carrier protein signature 291 305 IPR002067 GO:0055085
Lal8g1112 554 PRINTS Mitochondrial carrier protein signature 331 351 IPR002067 GO:0055085
Lal8g1112 554 PRINTS Mitochondrial carrier protein signature 384 402 IPR002067 GO:0055085
Lal8g1112 554 PRINTS Mitochondrial carrier protein signature 429 447 IPR002067 GO:0055085
Lal8g1112 554 PRINTS Mitochondrial carrier protein signature 476 498 IPR002067 GO:0055085
Lal8g1112 554 SUPERFAMILY EF-hand 51 244 IPR011992 -
Lal8g1112 554 ProSiteProfiles Solute carrier (Solcar) repeat profile. 273 356 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1112 Lal-Chr8 9286264 9290286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1112 4 554 EF-hand Containing Proteins AT5G51050 62.749 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1112 K14684 - gmx:100775805 781.941