Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1087 ATGGGTTCATTCTTATGGACTCTGTGTCTAGTTCTTTCATCACTAGCCTCTGTTGCACTCTGTGCTACCCCAAGAAGGCCAATAGATGTACAATTTGGCAGAAACTACTACCCCACTTGGGCTTATGATCACATCAAATACTTTAATGGAGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGGTACTGGTTTCCAGTCCAAAGGATCCTACTTGTTTGGTCACTTCAGCATGCACATTAAGATGGTTCCTGGGGATTCAGCTGGCACAGTCACTGCTTTCTATTTATCTTCCCAAAACTCTGAGCACGATGAGATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACTAATGTGTTTTCTGGTGGCAAAGGTGACAAAGAACAGAGAATCTTTCTCTGGTTTGATCCAACAAAAGAATACCACAGATACTCTATTCTATGGAACTTGTATCAGATTGTGTTCTTTGTGGATGATATACCAATAAGGGTGTTCAAGAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCCATGAAAATATACAACAGTTTATGGAATGCTGATGATTGGGCTACAAGGGGTGGATTAGAGAAAACTGATTGGTCCAAAGCTCCATTCATAGCACACTATAAAGGCTTTCACATTGATGGTTGTGAAGCTTCTGTTGAAGCCAAGTTCTGTGCCACACAAGGCAAAAAATGGTGGGATCAACCTGAATTCCAAGACCTTGATGCTGCTCAATGGAAAAGGCTTAGGTGGGTGCGCCAGAAATATACTATCTATAACTATTGCACTGATAGGAAGCGATACCCTCAGTTACCCCCTGAGTGCAAAAGAGACCGTGATATTTAA 882 0.415 MGSFLWTLCLVLSSLASVALCATPRRPIDVQFGRNYYPTWAYDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDKEQRIFLWFDPTKEYHRYSILWNLYQIVFFVDDIPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAHYKGFHIDGCEASVEAKFCATQGKKWWDQPEFQDLDAAQWKRLRWVRQKYTIYNYCTDRKRYPQLPPECKRDRDI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1087 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal8g1087 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 291 - -
Lal8g1087 293 PIRSF EndGlu_transf 1 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal8g1087 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 220 IPR000757 GO:0004553|GO:0005975
Lal8g1087 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 291 IPR044791 GO:0004553
Lal8g1087 293 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Lal8g1087 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Lal8g1087 293 CDD GH16_XET 29 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal8g1087 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Lal8g1087 293 Gene3D - 17 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1087 Lal-Chr8 8969225 8971909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1087 1 293 Glycoside Hydrolase AT5G13870 79.522 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1087 K08235 - gmx:547775 571.237