Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1084 ATGGCTACAAGCAGCGACCCTACCCAAGACGCATTAGACGAACAACAAAAACGTTCCGAGATCTACACCTACGAAGCCCCATGGCACATCTACGCCATGAATTGGTCCGTCCGCCGTGACAAAAAATACCGCCTCGCCATCTCCTCCCTCCTCGAACAATACCCAAACCATGTCGAAATTGTCCAGCTGGATGATTCAACGGGTGAGATTAAATCTGACCCTAACCTCTCCTTCGATCACCCTTACCCTCCTACCAAAGCAATCTTCATCCCCGACAGGGAGTGTGCCCGTCCTGACCTTCTCGCCACCTCCAGCGACTTCCTCCGTATCTGGTCCCTGCCCGACCCCGACGACTCCTGCCCGCTTCAGAATAACCGCGTTCAGATGAAGTCTGTTCTTAACGGTAACAAAAACAGTGAGTATTGTGGCCCAATTACGTCGTTTGATTGGAATGAAGCCGAGCCGAGGCGAATCGGAACGTCGAGTATTGATACTACTTGTACCATTTGGGATATTGAGAAGGAGACTGTGGATACTCAGCTTATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGTGTTGGTGTTTTTGCTTCTGTTTCTGCTGATGGTTCTGTTAGGGTTTTCGATCTTCGCGATAAGGAGCATTCTACTATCATTTATGAGAGCTCTGATCCTGATACGCCGTTGGTTCGCCTTGGATGGAACAAGCAGGATCCTAGGTACATGGCAACAATCATAATGGACAGTGCTAAGGTTGTTGTGCTTGATATTCGCTTTCCGACCCTTCCGGTGGTGGAGTTGAAGAGGCACCAGGCGAATGTGAATGCAGTTGCCTGGGCACCTCATAGTTCTTGCCATATCTGCACTGCAGGGGATGACTCGCAGGCTTTGATTTGGGACCTTTCTTCAATGAGTGAGCCTGTGGAGGGTGGGTTGGACCCTATTCTTGCTTACACTGCTGGGGCAGAGATTGAACAGCTCCAGTGGTCGTCTTCTCAGCCGGACTGGGTTGCCATTGCTTTCTCCACCAAACTTCAGATTCTAAGGGTGTGA 1062 0.5 MATSSDPTQDALDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAISSLLEQYPNHVEIVQLDDSTGEIKSDPNLSFDHPYPPTKAIFIPDRECARPDLLATSSDFLRIWSLPDPDDSCPLQNNRVQMKSVLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSDPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELKRHQANVNAVAWAPHSSCHICTAGDDSQALIWDLSSMSEPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1084 353 SMART WD40_4 263 303 IPR001680 GO:0005515
Lal8g1084 353 SMART WD40_4 71 112 IPR001680 GO:0005515
Lal8g1084 353 SMART WD40_4 126 171 IPR001680 GO:0005515
Lal8g1084 353 SMART WD40_4 174 212 IPR001680 GO:0005515
Lal8g1084 353 SUPERFAMILY WD40 repeat-like 56 338 IPR036322 GO:0005515
Lal8g1084 353 PANTHER WD REPEAT CONTAINING PROTEIN 14 353 IPR045159 -
Lal8g1084 353 Coils Coil 348 353 - -
Lal8g1084 353 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Lal8g1084 353 Pfam WD domain, G-beta repeat 181 212 IPR001680 GO:0005515
Lal8g1084 353 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Lal8g1084 353 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 312 IPR001680 GO:0005515
Lal8g1084 353 Gene3D - 18 352 IPR015943 GO:0005515
Lal8g1084 353 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1084 Lal-Chr8 8943571 8946220 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1084 K11805 - cit:102615088 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1084 8 8943571 8946220 Lal8g1084 8 8943571 8946220 ECH