Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal8g1035 | ATGGCAATTGCACGCACTGGTGTCTACGTCGACGATTATTTGGAGTATTCTAGTACATTGCCCGCTGAACTTCAAAGGCTGCTCAATACCGTGCGAGAACTCGATGAACGATCTCAATCTATGATAAACCAGACCGGGCAGCAAACAAAGTACTGTATGGGGTTTTCATCACATGGCTCTAAAAAGGGTAATCATGCTGGTGGCCATAACTATAATAATAACAATTATGTGAATGAGGAAGACGATGCAGCCATTGAGAAAATGCAAAAAGAAATCGAGGCAAATCAGGATAGTGCCTTAAGTCTATGTACTGAGAAGGTTTTGTTGGCACGGCAAGCATATGATCTGATAGATAGCCATATAAAACGACTTGATGAGGATCTAAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCACGAGAAGAACCAGCTATCCTCCCCCCATTGCCACTAGTTCCTAAGCCTGAAAAACGCAGGCCCTCATATGGAACACCTCAATCGAAGAGACTTGATTACAGGGATAGAGACTGGGATCGGGAGCGTGATAGGGACTTTGAGCTAATGCCTCCACCAGGAAGCCATAAAAAGGAATATGCAACTCCAATGGATGTTGATCAACCCATTGATCCAAACGAACCTAGATACTGTGTTTGCCATGAGGTGTCTTTTGGAGATATGATTGCTTGTGACAATGAAACTTGCCAAGGAGGTGAATGGTTCCACTATGTATGTGTTGGCCTAACACAAGAAACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAAATTACTGCCACAATGTAGAGGGTGA | 822 | 0.4331 | MAIARTGVYVDDYLEYSSTLPAELQRLLNTVRELDERSQSMINQTGQQTKYCMGFSSHGSKKGNHAGGHNYNNNNYVNEEDDAAIEKMQKEIEANQDSALSLCTEKVLLARQAYDLIDSHIKRLDEDLNNFAEDLKQEGKIPREEPAILPPLPLVPKPEKRRPSYGTPQSKRLDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPRYCVCHEVSFGDMIACDNETCQGGEWFHYVCVGLTQETRFKGKWYCPTCKLLPQCRG | 273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal8g1035 | 273 | SMART | ING_2 | 9 | 131 | IPR024610 | - | |
| Lal8g1035 | 273 | SMART | PHD_3 | 218 | 266 | IPR001965 | - | |
| Lal8g1035 | 273 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 206 | 267 | IPR013083 | - | |
| Lal8g1035 | 273 | ProSiteProfiles | Zinc finger PHD-type profile. | 216 | 268 | IPR019787 | - | |
| Lal8g1035 | 273 | PANTHER | INHIBITOR OF GROWTH PROTEIN | 2 | 268 | IPR028651 | - | |
| Lal8g1035 | 273 | Coils | Coil | 24 | 44 | - | - | |
| Lal8g1035 | 273 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
| Lal8g1035 | 273 | Pfam | Inhibitor of growth proteins N-terminal histone-binding | 9 | 131 | IPR024610 | - | |
| Lal8g1035 | 273 | MobiDBLite | consensus disorder prediction | 184 | 203 | - | - | |
| Lal8g1035 | 273 | MobiDBLite | consensus disorder prediction | 139 | 178 | - | - | |
| Lal8g1035 | 273 | CDD | PHD_ING | 218 | 265 | - | - | |
| Lal8g1035 | 273 | SUPERFAMILY | FYVE/PHD zinc finger | 192 | 266 | IPR011011 | - | |
| Lal8g1035 | 273 | Gene3D | - | 5 | 129 | - | - | |
| Lal8g1035 | 273 | PANTHER | PHD FINGER PROTEIN ING2 | 2 | 268 | - | - | |
| Lal8g1035 | 273 | CDD | ING_plant | 17 | 128 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal8g1035 | Lal-Chr8 | 8193372 | 8198540 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal8g1035 | K11346 | - | gmx:100787916 | 451.825 |