Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1019 ATGGAAATAGCTGTTTCTCCACAAGCACAAAGGCACAACTTTCATATGCCAGGTCACAAGGTTTCGTCTACCGGGCCCCAGAAAGATCTATGGCTTGCTGTTCGAGAAGGATCTCTGAATGATTTAGAGTCGGGCTTGGCATTACTGAAGAAGAGTGGGGACAATGTCAATTTGAGAAACACCTTTGGGCTAACCCTTCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTACGGAGGCTTCTTGCAGCTGGAGCAGATCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGTCTTCACAGGGCTCTGCATTTTGGTCATTTCGCTGTGGCAGGCATTCTTCTGAAGCATGGAGCCTCTATTACATTGGAGGACCCTAAGTCTCGTATACCTGTAGATCTGATCTCTGGCCCTGTATTTCAAGTTTTTGGAAATGATCGCAATTCTGTGGCTACGGAGGTATTTAGTTGGGGTAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCACATATTCAAAAGCTACCATGTAAAGTTGATTCGCTTAGTGGTTCAATCATAAAGCTTATTTCGGCGGCAAAATTCCATAGTGTGGCTCTTACTGCTCGTGGAGAAGTGTATACTTGGGGTTTTGGAAGGGGAGGTCGTCTTGGGCACCCTGATTTTGACATACACAGTGGTCAAGCTGCTGTCATCACACCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGGTGGCAATTGCTGCAGCTAAGCATCATACTGTTATTGCTACTGAGGGTGGGGATGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTGGGGTACACTTCTGTTGATTCACAACCCACACCTCGCAGAGTGTCTTCTCTAAGGTCAAAAATCATTGCTGTTGCTGCAGCAAACAAGCACACAGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACCTGGGGTTGCAATAGAGAGGGTCAGCTCGGTTATGGCAGCTCAAACTCAGCATCAAATTACACCCCCCATTTGGTTGAATCCTTGAAGGGGAAGGCTTTAACCCGAGTTTCTGCGGCAAAATATCATACAGTTGTATTAGGGTCTGATGGAGAGGTATACACTTGGGGTCATAGACTTGTCACTCCAAAACGTGTAATAGTTACTAGGAACTTGAAAAAAAGTGGAAGCACTCCTTTAAAGTTTCATCGCATGGAACGACTTCATGTGGTATCTATAGCTGCAGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCAGATCCCGATCTTAAATGCCAACAGTTATATGCTATGTGTGGAAGAAATATGGTAAGCATATCTGCTGGAAAGTATTGGACTGCAGCAGCGACAGCTACAGGTGATGTTTACCTGTGGGATGGGAAGAAAGGTAAGGATAAGCCACTTGTTGCTACTCGGCTGCATGGTGTAAAGAAGGCTACTTCAGTTTCAGTCGGTGAAACACATTTGCTAATTGTTGCTTCCCTCTATCATCCTGTCTATTCTCTCAATGTGACTGAGAATTCTCAGAATCTCAAGTTGAATAGTAGGGATGATACGGAAGAGTTAAATGAAGACATTTTATTTGAGGATATGGAATCCAATAATATGATATATAGCGTACAAAATGATACTTCTGACCAGAGATCCATACCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCAGAGTGTCTAGTGGAGCCACGGAATGCCCTGCAACTGTTTGAGATTGCTGACTCTCTTGATGCGAATGATTTGAAGAAGTATTGTGAGGATATTGTTATACGCAACCTTGATTACATATTTACAGTTTCACCACATGCTGTGGCAAGTGCTTCACTAGATATTCTGGCTAACCTGGAGAGGTTGTTAGACCAGAGATCATCCGAGCCATGGAGTCATCGTCGATTCCCTACTCCAACTGCTACTTTCCCTGCCATCATTAATAGTGAAGAGGATGATAGCGATATAGAGTTTCAAAGGACTCCTGACAAACCCACGAAAATGCATGCATTGAAATTGGAGAAGGATCGAAGAGTAGATTCCTTTCTTCAACCCAAGGATGATCCTGATCAAGAAACTTCCAAATTAGTTCGAGCCATAAGAAAAAAGTTGCAGCAGATTGAGATGCTTGAAGCAAAGCAATCTAAGGGACATCTTCTCGATGACCAGCAGATTGCAAAGCTTCAATCTAAGTCGTCACTTGAGAGCTCACTTGCAGACTTAGGTGTTCCTTTTGAGACTTCATGGAATAAAGAATCACCTTCTGCACAGCTAGAAGGGAAAGGTACTAAGAAGGGTAAACTATCGAAAAAGCAGAGGAGAAAGAACTGTGAACCTAGCACAGTGAAGACAGAAGTAGAAGTTGTGTATTCTAAGAACGAAGTAATTCCTGAATCTGCGAAAGACTTGTTGGAAACTGACATCTTGACAGTTCCTAACTCGAAGGTGGAAGAGGATGCAACATGTGAACAATCCACCGATGACAAAGGCGCAAAAGATTTATCTTTTGTTGTAGAGAAGAAAGATCCTATGGAATCGCCGAAAGACAGGGGCCATTCACCAAAGGTTTCTAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGATGAAGCCCCGAAAGTGGTGGCTCCGGTTCCACTGACACCAAAAACTGAGGGTCCAGCATGGGGTGGTGCCAAGTTTATGAAGGGTTCTGCCTCGCTTCGTGAAATCCTGGATCAACAAAGCAAAATAAAAGAAAACAAACTAGTTAGCAGAAAAGACAAGATGGAAGATCATTCTGATTTTGACAGTGACGGGAAAATAAAGTTGAGTTCATTTCTTCCTTCCAGCCCAATACCTGTTGTCTCAAATCATAGTCCAATGGCATCTGATGGAGAAATAAGTACCCTTACCTGGGCTGCTTCAGGAACCCCTCCTCAACCCTCTAAACAGTCTTTTAGGGACATACAAATGCAACAGGTAAAGAAACACCAAAGCCTTTCCCATAGTCCAAAGACTAAAACTGCTGGATTTACTATTGCTACCGGTCAAGGCTCACCATCAGAAGCAAATTCAGTAAGCCGCTGGTTCAAGCCTGAAGTCGATACACCATCCTCGATTCGTTCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTACAGCAGCGTTAAGATCGTCCGAAAGCAGTTTTGA 3252 0.4382 MEIAVSPQAQRHNFHMPGHKVSSTGPQKDLWLAVREGSLNDLESGLALLKKSGDNVNLRNTFGLTLLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHFAVAGILLKHGASITLEDPKSRIPVDLISGPVFQVFGNDRNSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLSGSIIKLISAAKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVVAIAAAKHHTVIATEGGDVFTWGSNREGQLGYTSVDSQPTPRRVSSLRSKIIAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGSSNSASNYTPHLVESLKGKALTRVSAAKYHTVVLGSDGEVYTWGHRLVTPKRVIVTRNLKKSGSTPLKFHRMERLHVVSIAAGMVHSMALTDDGALFYWVSSDPDLKCQQLYAMCGRNMVSISAGKYWTAAATATGDVYLWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYSLNVTENSQNLKLNSRDDTEELNEDILFEDMESNNMIYSVQNDTSDQRSIPSLKSLCEKVAAECLVEPRNALQLFEIADSLDANDLKKYCEDIVIRNLDYIFTVSPHAVASASLDILANLERLLDQRSSEPWSHRRFPTPTATFPAIINSEEDDSDIEFQRTPDKPTKMHALKLEKDRRVDSFLQPKDDPDQETSKLVRAIRKKLQQIEMLEAKQSKGHLLDDQQIAKLQSKSSLESSLADLGVPFETSWNKESPSAQLEGKGTKKGKLSKKQRRKNCEPSTVKTEVEVVYSKNEVIPESAKDLLETDILTVPNSKVEEDATCEQSTDDKGAKDLSFVVEKKDPMESPKDRGHSPKVSKKKSKKGGLSMFLSGALDEAPKVVAPVPLTPKTEGPAWGGAKFMKGSASLREILDQQSKIKENKLVSRKDKMEDHSDFDSDGKIKLSSFLPSSPIPVVSNHSPMASDGEISTLTWAASGTPPQPSKQSFRDIQMQQVKKHQSLSHSPKTKTAGFTIATGQGSPSEANSVSRWFKPEVDTPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQF 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1019 1083 MobiDBLite consensus disorder prediction 762 799 - -
Lal8g1019 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Lal8g1019 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Lal8g1019 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Lal8g1019 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Lal8g1019 1083 Gene3D - 386 510 IPR009091 -
Lal8g1019 1083 Gene3D - 139 385 IPR009091 -
Lal8g1019 1083 MobiDBLite consensus disorder prediction 937 955 - -
Lal8g1019 1083 SUPERFAMILY Ankyrin repeat 31 136 IPR036770 -
Lal8g1019 1083 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Lal8g1019 1083 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1082 - -
Lal8g1019 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Lal8g1019 1083 MobiDBLite consensus disorder prediction 836 868 - -
Lal8g1019 1083 SUPERFAMILY RCC1/BLIP-II 124 431 IPR009091 -
Lal8g1019 1083 MobiDBLite consensus disorder prediction 987 1042 - -
Lal8g1019 1083 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1082 - -
Lal8g1019 1083 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Lal8g1019 1083 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Lal8g1019 1083 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Lal8g1019 1083 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Lal8g1019 1083 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Lal8g1019 1083 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Lal8g1019 1083 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Lal8g1019 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Lal8g1019 1083 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Lal8g1019 1083 MobiDBLite consensus disorder prediction 937 958 - -
Lal8g1019 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Lal8g1019 1083 Gene3D - 24 138 IPR036770 -
Lal8g1019 1083 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Lal8g1019 1083 SUPERFAMILY RCC1/BLIP-II 396 508 IPR009091 -
Lal8g1019 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Lal8g1019 1083 MobiDBLite consensus disorder prediction 1 24 - -
Lal8g1019 1083 MobiDBLite consensus disorder prediction 987 1045 - -
Lal8g1019 1083 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Lal8g1019 1083 Pfam Ankyrin repeats (3 copies) 42 127 IPR002110 GO:0005515
Lal8g1019 1083 MobiDBLite consensus disorder prediction 831 880 - -
Lal8g1019 1083 SMART ANK_2a 62 91 IPR002110 GO:0005515
Lal8g1019 1083 SMART ANK_2a 96 125 IPR002110 GO:0005515
Lal8g1019 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1019 Lal-Chr8 8016005 8025830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1019 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 35.294 2.39e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1019 K24810 - gmx:100800604 1717.21