Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1003 ATGGTACATTTAATGTACTTACTTTTACTAAGAGATCTAACAAGAGTTCACCGATATAGTTGGGGTTCGGCTTGTTTAGCAAACTTGTATATGGAAATGTGTCGGGCAACAAAGTCTAACGCAAAAGCCATGGGTGGGTGTTTGACACTTCTACAGTCGTGGGGTCAAAGAAATCAATTACTTGCACTGTCTAAGGAGTCTGAAAGTTCTGATAATCCTCTGGTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGAAGCTGTACGAGAAAGAACTTCTAACAGAAGACTCATACCTTCATATATATGGGTTACAAGGGGCTAGTTTTAATGCACAGCAGCTTGCCATTGTTTCCGGGCTTTATGAATGGCGGGACATTGTTGCTCGTGCAGAGGATGAGGGTACTGGCTATGTATTGCCAAATAAAACTATTCTTGAAATCGCGGAAGTCAAAATGCAAGTTTTTCCTGGTGGAGGTGAAAATGCTTTGTCAGTTGTTGGTCCAAGGCCAATGGAATGGTCTACTGTTCCATATAGCAGTCCTCATGCTCCAGGACCAAATGGAAAGCAGCGGACTTCAAGTTTGGAATCACCAATCATGCTGCTGGCGGGTCACCAAAGTGCTATATATACCATGAAGTTCAATCCAGAAGGATCGGTCATTGCATCTGGATCTCATGACAGAGAAATTTTCCTCTGGAATGTGCATGGTGATTGTAAGAACTTCATGGTTCTAAAAGGCCATAAGAATGCAGTTTTGGATCTTCACTGGACTACAGATGGGACTCAAATAGTCTCTGCCAGCCCTGACAAAACTCTGAGGGCATGGGATGTGGAAACCGGAAAACAAATTAAGAAGATGGTAGAGCATCTTTCGTATGTTAATTCATGTTGTCCTTCTCGGAGGGGGCCACCTCTTGTTGTCAGTGGCTCTGATGATGGAACTGCGAAACTATGGGATATGCGCCAAAGGGGTTCCATCCAAACATTCCCAGATAAATACCAGATTACTGCTGTCAGCTTCTCTGATGCATCTGATAAGATCTACACTGGTGGTATTGATAATGATGTCAAGGTATGGGATTTGCGTAAAGGTGAGGTTATCATGACGCTTCAAGGTCATCAAGATATGATTACTGGTATGCAGTTGAGTCCTGATGGTTCCTACCTTCTTACTAATGGCATGGATTGCAAGCTTTGCATCTGGGACATGCGCCCATATGCACCTCAAAATCGCTGTGTGAAGGTCTTGGAAGGGCACCAGCATAACTTTGAAAAGAACTTGCTCAAGTGTAATTGGTCAGCTGATGGAAGCAAGGTCACAGCTGGTAGTTCAGATCGAATGGTTTACATATGGGATACCACCACTCGGCGCATCTTGTATAAGCTTCCTGGTCACAATGGATCTGTTACTGAGTGTGGTTTTCATCCCAAAGAACCTATTATTGGATCTTGCAGTAGTGACAAGCAGATATATCTGGGGGAGATATGA 1494 0.4357 MVHLMYLLLLRDLTRVHRYSWGSACLANLYMEMCRATKSNAKAMGGCLTLLQSWGQRNQLLALSKESESSDNPLVEVYKRSYDVCMKLYEKELLTEDSYLHIYGLQGASFNAQQLAIVSGLYEWRDIVARAEDEGTGYVLPNKTILEIAEVKMQVFPGGGENALSVVGPRPMEWSTVPYSSPHAPGPNGKQRTSSLESPIMLLAGHQSAIYTMKFNPEGSVIASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDKTLRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVIMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCNWSADGSKVTAGSSDRMVYIWDTTTRRILYKLPGHNGSVTECGFHPKEPIIGSCSSDKQIYLGEI 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Lal8g1003 497 ProSitePatterns Trp-Asp (WD) repeats signature. 222 236 IPR019775 -
Lal8g1003 497 Pfam HRDC domain 114 151 IPR002121 GO:0003676
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 330 IPR001680 GO:0005515
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 464 497 IPR001680 GO:0005515
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 287 IPR001680 GO:0005515
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 406 - -
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 367 - -
Lal8g1003 497 SMART WD40_4 281 321 IPR001680 GO:0005515
Lal8g1003 497 SMART WD40_4 196 235 IPR001680 GO:0005515
Lal8g1003 497 SMART WD40_4 239 278 IPR001680 GO:0005515
Lal8g1003 497 SMART WD40_4 324 362 IPR001680 GO:0005515
Lal8g1003 497 SMART WD40_4 457 496 IPR001680 GO:0005515
Lal8g1003 497 SMART WD40_4 411 454 IPR001680 GO:0005515
Lal8g1003 497 SMART WD40_4 365 404 IPR001680 GO:0005515
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 236 IPR001680 GO:0005515
Lal8g1003 497 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 186 497 - -
Lal8g1003 497 CDD WD40 203 494 - -
Lal8g1003 497 Pfam Plant mobile domain 1 56 IPR019557 -
Lal8g1003 497 SUPERFAMILY WD40 repeat-like 200 494 IPR036322 GO:0005515
Lal8g1003 497 Gene3D - 195 497 IPR015943 GO:0005515
Lal8g1003 497 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 186 497 - -
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 246 283 - -
Lal8g1003 497 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Lal8g1003 497 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Lal8g1003 497 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Lal8g1003 497 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Lal8g1003 497 Gene3D HRDC domain 97 173 IPR044876 -
Lal8g1003 497 SUPERFAMILY HRDC-like 93 151 IPR010997 GO:0000166|GO:0044237
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 371 IPR001680 GO:0005515
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 463 IPR001680 GO:0005515
Lal8g1003 497 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 464 497 - -
Lal8g1003 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 406 IPR001680 GO:0005515
Lal8g1003 497 ProSitePatterns Trp-Asp (WD) repeats signature. 308 322 IPR019775 -
Lal8g1003 497 Pfam WD domain, G-beta repeat 367 404 IPR001680 GO:0005515
Lal8g1003 497 Pfam WD domain, G-beta repeat 283 321 IPR001680 GO:0005515
Lal8g1003 497 Pfam WD domain, G-beta repeat 413 454 IPR001680 GO:0005515
Lal8g1003 497 Pfam WD domain, G-beta repeat 199 235 IPR001680 GO:0005515
Lal8g1003 497 Pfam WD domain, G-beta repeat 337 362 IPR001680 GO:0005515
Lal8g1003 497 Pfam WD domain, G-beta repeat 241 278 IPR001680 GO:0005515
Lal8g1003 497 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1003 Lal-Chr8 7810699 7822185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1003 284 494 Miscellaneous Gene Families AT5G08390 25.943 1.16e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1003 K12857 - gmx:100803276 688.723