Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0992 ATGTTATCATACCCTAACTTCATCAATTCGCATCAACCCTTTCAGTTCCTTCTCTCTAACCAACCCACTCGTTTTCTCTTCCCTACCACGTTTTCTCGCGTTTCTTCCTATGGAAAATGCAGGTCCAATTCTGTATCGTTGTTATTTTCTCTTAAGAATCGTAAGGGTAACGGTTTTGGTGTAAAAGCTTCTTTGCAATCGTCGGAGGAGGTTTCGGATGCTGTAGGTGTCGATGGTGGCTCGGTTGTTTTGCCGCAGCCGTATTCTGTCAAGATTCCTGTTGGTGATAGACATATTTTGGTTGAGACTGGTCACATAGGAAGACAAGCAAGTGGTTCTGTCACAGTTACAGATGGAGAAACTATTGTGTACACTTCTGTTTGTTTGGATGATGTTCCTAGTGAGCCAACTGATTTTTTCCCTCTTTCTGTGAATTATCAAGAACGTTTTTCAGCAGCTGGCCGCACCAGTGGAGGGTTTTTCAAACGAGAAGGAAAAACAAAGGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGCCCTCTTATGCCTAAGGGCTTCTACCATGAAACTCAAATATTGTCTTGGGTTTTAAGTTATGATGGATTGCACTGCCCCGATTCCTTGGCTGTCACTGCTGCTGGTATAGCAGTTGCACTTTCAGAAGTGCCAATGTCAAAAACAGTTGCTGGAGTTCGAATCGGACTTGTAGGTGATAAGTATATCATAAATCCTACAACCGAGGAGATGGAACACTCTGAGTTGGACCTCATGCTGGCTGGCACAGATAGTGCAATATTAATGATAGAGGGTTATGGCAATTTTCTTTCAGAAGAGAAGTTACTTCAAGCTGTAGAAGTTGGTCAGGATGCTGTGCGAGAAATCTGTAATGCAGTAGAAGCTTTGGTTAAGAAGTGTGGGAAACCAAAGATGTTTGATTCAATCAAGTTACCTCCTCCAGAGCTTTATAAACATGTTGAGGAAATTGCTGGTGATGAGTTGGTTAATGCTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTTTCATTATTAGAAGATAAGGTTCTGGAGATACTTACAGAAAGTGGGGTTGTAACTAATGATGCAGTACCAAGGAGTAATGCTGAAACGATTGCGGAGATTCTTGAGGTGGAAGACGAAGATGAGGAAGTAATTGTGGATGGTGAAGTTGATGAAGGTGATGTTCACATAAAGCCAACTCCACCCAAACCAACCCCTTTATTTTCTGAGGTAGACGTGAAGTTAGTATTTAAAGAAGTTACGTCCAATTTTTTGAGGAAACGCATAGTACAGGGGGGGAAAAGGAGTGATGGACGAACACCAAATGAGATACGTCCAATTAACTCAAGATGTGGCCTATTACCTAGAGCACATGGAAGTGCTCTTTTTACTAGAGGCGAGACACAGTCACTAGCAGTTGCTACACTTGGGGATAAGCAAATGGCCCAAAGGATAGACAATCTTATAGGTGTTGATGATTTCAAAAAGTTTTATCTTCAGTATACATTTCCTCCTTCATGTGTTGGGGAAGTTGGGCGAATTGGTGCACCGGGTAGAAGAGAAATTGGTCATGGAATGCTTGCTGAGAGATCCCTTGAACCAATTTTGCCTACTGACGATGATTTCCCTTACACTATACGTGTTGAGAGTACTATCACAGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTGGCCTTGCAAGATGCTGGTGTTCCTATTAAGTGCTCTATTGCTGGAATTGCAATGGGTATGGTACTGGACACAAAGGAATTTGGTGGTGATGGGACTCCACTTATTCTTTCTGATATAACTGGCTCTGAAGATGCATCTGGAGATATGGATTTTAAGGTTGCTGGAAATGAAGACGGCATAACTGCATTTCAGATGGACATTAAGGTGGGAGGAATTACTTTGCCCATCATGAGAGAGGCGCTCGTACAAGCAAGAAATGGCAGGAAGCAGATTCTTGGAGAAATGATGAATTGTTCACCTCCTCCAGCAAAAAGACTTTCCAAGCACGCACCCCTGATTTACATTATGAAGGTCAAACCTGAGAGAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAGGAGCATTATTGAGGAATGTGGAGTAGAGGCTATTGATACAGATGATAATGGCACTGTGAAAATATTTGCAAAAGATTTGGCTAGTTTGGAGAAGTCTAAAGCTATTATAAGTAATTTGACGATGGTTCCTTCTATTGGTGATATATATAGGAATTGTGAAATCAAATCAATTACTCCATATGGAGCTTTTGTAGAGATAGCACCTGGACGAGAGGCTTTCAAAGTTGGAGACCGTATTGATGTAAAGCTTATGGAGATAAATGATCGGGGACAGCTGCGCCTTAGCCACCGAGCTCTGCTTCCCGCTGCAGATCTAGAGAATTCAAGTGCTGAACAGCCTGCTGGTAAACTCACTGATGATACTTCAGCCTCACAAAAATCATACGATAAGGGTTTCTCGAAGAAGGACACAACATCATCTAAACGGAGATCAGAGGACGATTCTGTAATTCCATCCAAAAAATTTATCAGGAAATTAGTCAGTTCTTCCCAGGATAAGCCTTTCACTAACAAAGACAAGATAAAGAAGAGTAGCAATAAAGCAGTTGGCAGCGTCTCTGGCAAAGATGAAAGTAGTTGGGTTAGTGGAGAGCCACAAAATTGA 2751 0.4173 MLSYPNFINSHQPFQFLLSNQPTRFLFPTTFSRVSSYGKCRSNSVSLLFSLKNRKGNGFGVKASLQSSEEVSDAVGVDGGSVVLPQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLDDVPSEPTDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPLMPKGFYHETQILSWVLSYDGLHCPDSLAVTAAGIAVALSEVPMSKTVAGVRIGLVGDKYIINPTTEEMEHSELDLMLAGTDSAILMIEGYGNFLSEEKLLQAVEVGQDAVREICNAVEALVKKCGKPKMFDSIKLPPPELYKHVEEIAGDELVNALQIRNKIPRRKALSLLEDKVLEILTESGVVTNDAVPRSNAETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPPKPTPLFSEVDVKLVFKEVTSNFLRKRIVQGGKRSDGRTPNEIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQRIDNLIGVDDFKKFYLQYTFPPSCVGEVGRIGAPGRREIGHGMLAERSLEPILPTDDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMREALVQARNGRKQILGEMMNCSPPPAKRLSKHAPLIYIMKVKPERINLIIGSGGKKVRSIIEECGVEAIDTDDNGTVKIFAKDLASLEKSKAIISNLTMVPSIGDIYRNCEIKSITPYGAFVEIAPGREAFKVGDRIDVKLMEINDRGQLRLSHRALLPAADLENSSAEQPAGKLTDDTSASQKSYDKGFSKKDTTSSKRRSEDDSVIPSKKFIRKLVSSSQDKPFTNKDKIKKSSNKAVGSVSGKDESSWVSGEPQN 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0992 916 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 694 781 IPR036612 GO:0003723
Lal8g0992 916 Pfam KH domain 696 753 IPR004088 GO:0003723
Lal8g0992 916 SUPERFAMILY Nucleic acid-binding proteins 767 825 IPR012340 -
Lal8g0992 916 Pfam 3' exoribonuclease family, domain 2 232 293 IPR015847 -
Lal8g0992 916 Gene3D - 407 689 IPR027408 -
Lal8g0992 916 CDD RNase_PH_PNPase_2 455 683 - -
Lal8g0992 916 MobiDBLite consensus disorder prediction 820 916 - -
Lal8g0992 916 SMART kh_6 691 756 IPR004087 GO:0003676
Lal8g0992 916 SUPERFAMILY Ribonuclease PH domain 2-like 583 686 IPR036345 -
Lal8g0992 916 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 86 816 IPR012162 GO:0003723|GO:0004654|GO:0006402
Lal8g0992 916 MobiDBLite consensus disorder prediction 845 869 - -
Lal8g0992 916 Gene3D K Homology domain, type 1 690 757 IPR036612 GO:0003723
Lal8g0992 916 CDD PNPase_KH 692 752 - -
Lal8g0992 916 ProSiteProfiles Type-1 KH domain profile. 692 752 - -
Lal8g0992 916 MobiDBLite consensus disorder prediction 895 916 - -
Lal8g0992 916 SUPERFAMILY Ribonuclease PH domain 2-like 230 314 IPR036345 -
Lal8g0992 916 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 227 IPR020568 -
Lal8g0992 916 SMART S1_6 760 813 IPR022967 -
Lal8g0992 916 MobiDBLite consensus disorder prediction 827 844 - -
Lal8g0992 916 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 71 880 - -
Lal8g0992 916 CDD RNase_PH_PNPase_1 88 314 - -
Lal8g0992 916 SUPERFAMILY Ribosomal protein S5 domain 2-like 430 601 IPR020568 -
Lal8g0992 916 Pfam 3' exoribonuclease family, domain 1 97 227 IPR001247 -
Lal8g0992 916 Pfam 3' exoribonuclease family, domain 1 455 589 IPR001247 -
Lal8g0992 916 Gene3D - 86 311 IPR027408 -
Lal8g0992 916 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 71 880 IPR012162 GO:0003723|GO:0004654|GO:0006402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0992 Lal-Chr8 7658421 7680778 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0992 K00962 - jre:109000860 1266.14