Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0890 ATGTGGGCTCTTCGTCGCGCTTCCTTCCCTCTCAGGAACCAAGGATATACTGTAAGAGCTTCTTGTGTCAAATTAATTCCGACTACTTATACGGAAGATGAGGCGGGTATCTCTGAGCCTCCTGAAGTAGCATCATATGGTGGATTTATGTCTCTGAAGAAGTTTTACCACTCAGGACATGCTTCCCCAAAATTTAATCTCAGTATACGTGAACTTTCTTCACAAGCTGATGCGAATAGCGCGAAAGAGGACGATGGTCTTTTGCAGGATGGATTTTCTGAACTGGAGACAGAGACACCTGCTGCTGGTGATGGATTGGAAAATCAAAATCTATTGACTTCTGATACATATTTATCCGACGATGTCGAGGGACCACAAAATGAGGTGGAGTTATCGGATACTGAAATTGACGATTCGACTGAGAAAAAATCACGTAGAGGAAGGGCTGAATCAGAAATATTTAAGGAGATCATTAATAATTCCACCTCTTCTATTTCTTCGGTTCTGGATAAGTGGCTTGAAGAAGGGAAAGAACTGAGCAGACAAGAGATCTCATTGGCCATGCTTAATCTTAGGAGGCGTAAAATGTATGGGATAGCTTTGCAGTATTCAAAGAAAGGTGATGTCCATAATTCAGAAAAGATTTTCTATGGAATGAAACAAGCTGGTTATACTTCTCGAGCAAGGCAGTACCAAGCTTTATACAAGCCTATGAAAATGCAAAGTTACGTGTTACCAGTTCTGTTCTCAGAGTGGCTCGAGTCAAATAAGCAGCTTGATTTTGTTGAGAGAGATTATGCTTCTCGACTTGATTTAATTGCCAAATTCCGTGGCCTACAGAAGGCAGAGAGTTACATCCAGACTATTCCAGAATCTTTTAGAGGGGAGATAATATATCGAACTTTATTGGCTAACTGTATCAGTCAGAACAATTTGAAGAAAGCAGAGGAGATTTTCAATAAAATGAAGGATTTGGAGTTTCCTCTTACACAATTTGTTTGCAACCAGTTGCTTCTTCTGTATAAGAGGAATGACAAGAAGAAAATCGCTGATGTATTATTGGTGATGGAAAGTGAGAATATCAAACCTTCTCCGTTTACTTATAAAATCTTAATCGACACAAAAGGCCAGTTCAATGATATTGCTGGAATGGATCAAATTGTTGAGTCAATGAAGGCTGAAGGCATTGAACCAGACATTGGAACAAAATCAGTTATGGTTGGGCATTACATCTCAGCTTCACTTGAAGAAAAGGCTGAAAATTTATTAAAGGAGATGGAAGGTGAGGACTTGAAAAAGAATCGCTGGGTATGCCGATTGTTGCTTCCTCTCTATGCAGACCTGGGAAAGGTAGATGAAGTGGGAAGAATTTGGAAGATCTGCGAGTCAAATCCGTGGATTGAGGAGTGTCTGGCTGCAATTGAAGCTTGGGGGAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTTGAGATGATGTCAAAGAAATGGAAGCTTTCTTCCAGGAACTTCTCAGTACTACTGAAGGTTTATGCCAATCATAAGTTGGTAACAAAGGGCAAGGATCTTGTTAAGCGAATGGCAGATAGTGGGTGCCGAATAGGCCCATTGACCTGGGATGCACTTGTGAAACTTCATGTCCAAGCCGGGGAAGTAGAGAAGGCAGACTCTATTCTGCAGAAGGCAATCCAACAGAGGCAGGTGAAGCCAATCTTTCCTACATACTTTTCTATTTTGGAACAGTATTCAAAGAATGGTGATGTCCATAATTCAGAAAAGATTTTCTATGGAATGAAACAAGCTGGTTATACTTCTCGAGCAAGGCAGTACCAAGCTCTAATACAAGCCTATGTAAATGCTAAGGTTCCAGCGTATGGGATGAGGGACAGACTTAGAGCTGACAACATTGTTCCGAACAGAGTTTTGGCGAGCCTGTTGGTGAAAGTTGATGGATTTAGGAAGAATCCAGTTTCAGATTTGCTTGATTGA 1989 0.4087 MWALRRASFPLRNQGYTVRASCVKLIPTTYTEDEAGISEPPEVASYGGFMSLKKFYHSGHASPKFNLSIRELSSQADANSAKEDDGLLQDGFSELETETPAAGDGLENQNLLTSDTYLSDDVEGPQNEVELSDTEIDDSTEKKSRRGRAESEIFKEIINNSTSSISSVLDKWLEEGKELSRQEISLAMLNLRRRKMYGIALQYSKKGDVHNSEKIFYGMKQAGYTSRARQYQALYKPMKMQSYVLPVLFSEWLESNKQLDFVERDYASRLDLIAKFRGLQKAESYIQTIPESFRGEIIYRTLLANCISQNNLKKAEEIFNKMKDLEFPLTQFVCNQLLLLYKRNDKKKIADVLLVMESENIKPSPFTYKILIDTKGQFNDIAGMDQIVESMKAEGIEPDIGTKSVMVGHYISASLEEKAENLLKEMEGEDLKKNRWVCRLLLPLYADLGKVDEVGRIWKICESNPWIEECLAAIEAWGKLKKIDEAEAVFEMMSKKWKLSSRNFSVLLKVYANHKLVTKGKDLVKRMADSGCRIGPLTWDALVKLHVQAGEVEKADSILQKAIQQRQVKPIFPTYFSILEQYSKNGDVHNSEKIFYGMKQAGYTSRARQYQALIQAYVNAKVPAYGMRDRLRADNIVPNRVLASLLVKVDGFRKNPVSDLLD 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0890 662 PANTHER OS01G0280400 PROTEIN 240 662 - -
Lal8g0890 662 PANTHER OS01G0280400 PROTEIN 24 203 - -
Lal8g0890 662 PANTHER OS01G0280400 PROTEIN 202 236 - -
Lal8g0890 662 Pfam Pentacotripeptide-repeat region of PRORP 299 456 IPR033443 -
Lal8g0890 662 TIGRFAM PPR: pentatricopeptide repeat domain 298 328 IPR002885 -
Lal8g0890 662 Coils Coil 412 432 - -
Lal8g0890 662 PANTHER OS12G0527900 PROTEIN 240 662 - -
Lal8g0890 662 PANTHER OS12G0527900 PROTEIN 202 236 - -
Lal8g0890 662 PANTHER OS12G0527900 PROTEIN 24 203 - -
Lal8g0890 662 Pfam PPR repeat 474 496 IPR002885 -
Lal8g0890 662 Pfam PPR repeat 504 532 IPR002885 -
Lal8g0890 662 Pfam PPR repeat 538 561 IPR002885 -
Lal8g0890 662 MobiDBLite consensus disorder prediction 117 148 - -
Lal8g0890 662 Pfam Pentatricopeptide repeat domain 563 619 IPR002885 -
Lal8g0890 662 Gene3D Tetratricopeptide repeat domain 471 657 IPR011990 GO:0005515
Lal8g0890 662 Gene3D Tetratricopeptide repeat domain 295 470 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0890 Lal-Chr8 6526840 6531092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0890 265 622 EF-hand Containing Proteins AT1G02150 26.486 1.35e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0890 - - mtr:MTR_7g089770 789.645