Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0888 ATGGAAAATACACACATTGGTAATGCCTTCAAAACTCGCCACAAGAAATCTTCCTCCTCCGCCGCCTCCGCCGTACTCCGCCCTCCTCCCGACGTCGACGACCTCACCACTCTATTTCACGGCTCCGATCCACTTCGCGTTGAACTCTCCCGCCTCGAGAATGACCTCCGAGAGAAAGATAGAGAATTGGGAGAAGCTCTTGCTGAAATTAAGTCTTTGAGGAACTCAGAGCGTCTTAAAGAAAAAGGGGTTGAAGAGCTAGCAGATGAGCTAAACAAGGTTGACGAAAAGCTAAAAGCAACTGAAGCTCTTCTGGAAAGTAAGAATCTTGAAATAAAAAAAATCAATGATGAGAGAAAGTCAGCATTGGCTGCACAGTTTGCTGCAGAAGCCACACTTAGAAGGGTCCATGCTGCTCAGAAAGATGATGAAATGCCTCCTATTGAAGCCATTATCGCGCCCCTGGAGGCAGAGCTCAAACTTGCTAGGACGGAGGTGGTAAAGTTGCAGGATGACAATAGAGCACTAGATCGGCTAACCAAATCAAAGGAAGCTGCACTACTTGAGGCTGAGAGAACTGTTCAGATTGCTCTGGCAAAAGCATCTTTGGTTGATGATCTGCAAAACAAAAACCAAGAACTAATGAAACAGATTGAAATATGCCAGGAGGAGAACAGAATCCTTGACAAAATGCACCGGCAAAAGGTTGTTGAAGTTGAAAAGCTAACCCAAACTGTTCGTGAGCTGGAAGAAGTTGTCTTGGCAGGTGGGGCTGCTGCTAATGCTGTCCGTGATTACCAGCGAAAAGTTCAGGAGATGAATGAGGAAAGGAAAGTTTTGGAGCGAGAAGTAGCTCGTGCTAAAGTTTCTGCAAACAGGGTTGCCACTGTAGTTGCAAATGAGTGGAAAGATGGTAATGACAAAGTGATGCCGGGTGAAATGCAACAACTGCGTGATAAATTGACTGTAGCTGAGCGCACTGCAAAGGCAGAAGGACAAATGAAGGAAAAATATCAATTGCGCTTTAAAGTTTTGGAAGAAAGGATTAAGGCATCTAATGGTAATTCCAAAATTATTGCATCAGAAGGAAAAAACATTGCTAGTCGGCCTTCACGGCGCCAGTCTTTTGGTGGAGCAGAGAGTCTGTCTGTATCCTCCTCCAATGGATATCTATCAAGGAAAAACTCAAGTTCAAAGTCAGGGTCTCTTAGATCAAATAGCGCTAGTGTGTTACTAAAGCATACCAAACATTCATCTAGATCATTTGATGGTGGGAGCAGATCATTGGAAAGAGTAAGGCCAACTTCAGATGCTAATGTTAATGTGCTAAATAACATGGCAACCAACACCGATGATCAGATCATCACTACTGAGACAATTACTATGCATGAGAGTGCAAATGGTACTCCAATCGAAAAATCTAAATCAGAACACGAAGATCATGTTTCAGGAATGCTCTATGACATGTTGCAAAAAGAGGTTATTTCTTTGAGGAAAGCTTGTCGTGAAAAAGATCAGACACTTAAAGACAAGGATGACGCAATAGAGATGTTGGCAAAGAAGGTTGATACATTGAGCAAAGCAATGGAAGTCGAGGCCAAAAAAATGCGCAGGGAAGTAGCATCCATGGAAAAGGAGGTTGCTGCTATGCGTGTCAACAAGGAACATGATCATAGGGCACGTCGAACTAGTGCTCCTAGGGGGGCTGTAAATAGTTCACAGTCAATTTCTTCCCGGTTGAGTTTGCAGCTAAGAAAATCCTCAAGTTCCCATTTGGCAAGAAATGCACTCACTCCAAGGGCATATATGTCATCCATCTCTGCAACTGAAGGTTTTCAAAAAAGTGAAAGTTCCAAAGCTTATGGTTCTGATCAAATTCAGGTTCTTGAAGGCTTGGACCCTGTTAGAAAAAGGCCTGGAATGTATATCGGAAGCACAGGCCTGCGTGGGTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGATTTGCTTCTAAGATAGATGTTGTTTTACTTGCAGATGATTCTGTGAGCATCACTGACAATGGCCGTGGGATTCCTACCGACATGCATCCAGTTACAAAGAAATCTGCCTTGGAGACAGTGTTAACGGTCTTGCATGCTGGTGGAAAATTTGGTGGAGCCAATAGTGGCTACTCTGTTTCAGGAGGGTTACATGGTGTTGGTTTATCTGTAGTTAATGCATTGTCGGAGAAACTAGAGGTAACAATTTGGCGTGATGGATTGCAATACAAACAAAAGTATTCTCGTGGGAAGCCAGTAACAACACTCTTATGCAATGTTCTTCCAATTGAAGAGAAAGATCGTCAAGGGACATGTATCAGATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGATCACAACACTATAGCTGGACGCATTAGGGAGTTGGCTTTTCTCAACCCAAAGCTTACCATTATTCTTAGAAAAGAGGACAATGATCCAGAGAAGATTCAACATAATGAGTATTTCTATGCTGGGGGATTAGTTGAGTATGTTAAATGGCTTAACACTGATAAGAAAGCTGTTCATGATGTTCTGAGTTTTAGAAAAGAAACAGACGGAATCACCATTGATGTTGCTTTTCAATGGTGTGAGGATGCATATTCAGATACAATACTGGGATATGCGAATAGTATACGAACTGTTGATGGTGGCACCCATATTGATGGCATGAAGGCTTCTATAACAAGAACACTGAATAATCTTGGAAAGAAGTCAAAAGTTATCAAGGAAAAGGATATTACTTTAAGTGGTGAGCATGTGAGAGAGGGTCTAACATGTGTTGTTTCAGTCAAGGTCCCAAATCCAGAGTTTGAAGGACAAACAAAGACAAGGTTGGGAAATCCAGAGGTGCGAAGAGTGGTTGACCAATCTATTCAAGAGTATCTTACTGAGTATTTGGAGTTGCATCCAGATGTTCTTGATTCCGTACTTTCTAAAGCTCTTAATGCTTTCAAGGCTGCTCTAGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAGAGTGTATTAAGATCTTCATCTCTTCCCGGAAAATTGGCTGATTGTTCATCCTCAAACCCTGAAGACTGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGATAGGCGCTTCCAGGCCATTCTCCCTCTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAGGAAATCCAAAATCTTATTCTTGGTCTCGGTCTTGGTGTGAAGGGAGAAGATTTTAAAAAGGATGCACTACGCTATCATAAGATTATTATTTTGACAGATGCTGATGTAGATGGTGCCCACATCCGAACGCTACTGCTGACATTTTTCTTTAGATATCAGAGAGCTTTGTTCGACCAAGGTTACATATATGTTGGTGTTCCACCATTGTACAAGGTTGTACGGGGAAAACAAATACACTATTGCTATGATGAATCGGATCTTAAAAAACTTCAAAGCTCATTTCCTCCTAATGCATCATACAACATACAAAGGTTCAAAGGGCTGGGAGAGATGATGCCTTTACAGCTATGGGAGACAACCATGGATCCAGAACGCAGGTTGTTGAAGCAGTTAAAGGTTGAAGATGCAGCTGAAGCAAATATTGTTTTTTCTTCCCTTATGGGTGCTCGGGTGGATTATCGGAAGGAGCTCATTCAAAATTCTGCAAACATGGTTGATGTTCAGCAGCTAGATATTTGA 3789 0.4215 MENTHIGNAFKTRHKKSSSSAASAVLRPPPDVDDLTTLFHGSDPLRVELSRLENDLREKDRELGEALAEIKSLRNSERLKEKGVEELADELNKVDEKLKATEALLESKNLEIKKINDERKSALAAQFAAEATLRRVHAAQKDDEMPPIEAIIAPLEAELKLARTEVVKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENRILDKMHRQKVVEVEKLTQTVRELEEVVLAGGAAANAVRDYQRKVQEMNEERKVLEREVARAKVSANRVATVVANEWKDGNDKVMPGEMQQLRDKLTVAERTAKAEGQMKEKYQLRFKVLEERIKASNGNSKIIASEGKNIASRPSRRQSFGGAESLSVSSSNGYLSRKNSSSKSGSLRSNSASVLLKHTKHSSRSFDGGSRSLERVRPTSDANVNVLNNMATNTDDQIITTETITMHESANGTPIEKSKSEHEDHVSGMLYDMLQKEVISLRKACREKDQTLKDKDDAIEMLAKKVDTLSKAMEVEAKKMRREVASMEKEVAAMRVNKEHDHRARRTSAPRGAVNSSQSISSRLSLQLRKSSSSHLARNALTPRAYMSSISATEGFQKSESSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGLRGLHHLVYEILDNAVDEAQAGFASKIDVVLLADDSVSITDNGRGIPTDMHPVTKKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSEKLEVTIWRDGLQYKQKYSRGKPVTTLLCNVLPIEEKDRQGTCIRFWPDKEVFTTAIQFDHNTIAGRIRELAFLNPKLTIILRKEDNDPEKIQHNEYFYAGGLVEYVKWLNTDKKAVHDVLSFRKETDGITIDVAFQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASITRTLNNLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRRVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDQGYIYVGVPPLYKVVRGKQIHYCYDESDLKKLQSSFPPNASYNIQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGARVDYRKELIQNSANMVDVQQLDI 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0888 1262 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 649 795 IPR003594 -
Lal8g0888 1262 Coils Coil 335 355 - -
Lal8g0888 1262 MobiDBLite consensus disorder prediction 566 581 - -
Lal8g0888 1262 CDD TOPRIM_TopoIIA_GyrB 1043 1157 IPR034160 -
Lal8g0888 1262 MobiDBLite consensus disorder prediction 1 38 - -
Lal8g0888 1262 MobiDBLite consensus disorder prediction 362 415 - -
Lal8g0888 1262 Gene3D - 617 844 IPR036890 -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 650 665 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 685 698 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 730 744 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 893 906 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 1045 1059 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 1112 1128 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 1130 1147 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 1150 1162 - -
Lal8g0888 1262 PRINTS DNA topoisomerase II family signature 1192 1208 - -
Lal8g0888 1262 SMART topII5 650 1253 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 621 631 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 802 817 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 817 830 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 845 867 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 937 953 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 985 999 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 999 1019 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 1095 1104 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 1213 1225 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 PRINTS DNA gyrase subunit B signature 1229 1245 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 Pfam Microtubule-associated protein 70 33 574 IPR009768 GO:0007010|GO:0008017
Lal8g0888 1262 Gene3D - 845 1023 IPR014721 -
Lal8g0888 1262 MobiDBLite consensus disorder prediction 553 581 - -
Lal8g0888 1262 Coils Coil 152 179 - -
Lal8g0888 1262 Coils Coil 526 553 - -
Lal8g0888 1262 Pfam DNA gyrase B 846 1015 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 Gene3D - 1024 1262 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 MobiDBLite consensus disorder prediction 362 431 - -
Lal8g0888 1262 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 514 1262 - -
Lal8g0888 1262 Pfam DNA gyrase B subunit, carboxyl terminus 1188 1249 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 621 835 IPR036890 -
Lal8g0888 1262 CDD HATPase_GyrB-like 651 835 - -
Lal8g0888 1262 Coils Coil 204 252 - -
Lal8g0888 1262 ProSitePatterns DNA topoisomerase II signature. 1047 1055 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lal8g0888 1262 CDD TopoII_Trans_DNA_gyrase 845 999 - -
Lal8g0888 1262 Coils Coil 263 290 - -
Lal8g0888 1262 ProSiteProfiles Toprim domain profile. 1043 1158 IPR006171 -
Lal8g0888 1262 SUPERFAMILY Ribosomal protein S5 domain 2-like 846 1016 IPR020568 -
Lal8g0888 1262 SMART HKATPase_4 646 796 IPR003594 -
Lal8g0888 1262 Coils Coil 84 125 - -
Lal8g0888 1262 Pfam Toprim domain 1044 1145 IPR006171 -
Lal8g0888 1262 TIGRFAM gyrB: DNA gyrase, B subunit 621 1262 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Lal8g0888 1262 Coils Coil 49 76 - -
Lal8g0888 1262 PANTHER DNA GYRASE SUBUNIT B 514 1262 - -
Lal8g0888 1262 SUPERFAMILY Type II DNA topoisomerase 1020 1252 IPR013760 GO:0003918|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0888 Lal-Chr8 6501236 6519384 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0888 K02470 - gmx:100807172 1194.49