Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0645 ATGATTAGCACCTTTTGGATTTTCAGAATCCAATATCATTTTTTTGTAACAAATAAAACTAAGCAAGGAATGTCTTGTGGAGTTGCACCAAGTCGCCTTGCTGAAGAGCGAAAGTCATGGAGAAAGAATCATCCATATGGTTTTGTGGCGAAGCCCGAAACCGATCCAGACGGGTCTGTGAATTTATTGTCTTGGCAGTGCATTGTCCCTGGCAAGACTGGAATGGACTATGAAGGAGGATTCTATCCTGTAAATCTTAAGTTTAACGACGATTACCCGTACAAACCTCCGATTTGCAAATTTCCTAAAGGGTTCTTACATCCTAATATTTATCCTTCTGGAATGGTATGCCTGTCAATCCTTAGTGAGTCTGAGGATTGGAAACCGGCGATTACTGTTAAGCAAATTCTTATAGGTATTCAAGATCTGCTTGACAAACCTAATCCAGCTAGTGCTGCCAATCACGAATTCAACCAGCTTTTTGTCAAGGATCCTGCTGAATAA 504 0.4067 MISTFWIFRIQYHFFVTNKTKQGMSCGVAPSRLAEERKSWRKNHPYGFVAKPETDPDGSVNLLSWQCIVPGKTGMDYEGGFYPVNLKFNDDYPYKPPICKFPKGFLHPNIYPSGMVCLSILSESEDWKPAITVKQILIGIQDLLDKPNPASAANHEFNQLFVKDPAE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0645 167 CDD UBCc 30 167 IPR000608 -
Lal8g0645 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 26 167 - -
Lal8g0645 167 SUPERFAMILY UBC-like 28 166 IPR016135 -
Lal8g0645 167 Pfam Ubiquitin-conjugating enzyme 32 166 IPR000608 -
Lal8g0645 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 106 121 IPR023313 -
Lal8g0645 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 28 167 IPR000608 -
Lal8g0645 167 SMART ubc_7 31 167 - -
Lal8g0645 167 Gene3D Ubiquitin Conjugating Enzyme 18 167 IPR016135 -
Lal8g0645 167 PANTHER SUMO-CONJUGATING ENZYME SCE1-LIKE ISOFORM X1 26 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0645 Lal-Chr8 4542513 4544928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0645 32 153 Miscellaneous Gene Families AT1G17280 28.800 2.72e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0645 K10577 - han:110874767 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0645 8 4542513 4544928 Lal8g0645 8 4542513 4544928 ECH