Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0464 ATGGGTGGATATGATGAAGAGTGTGATTACCTCTTTAAGTGTGTTCTGATTGGAGACTCTGGAGTTGGAAAATCAAATCTGCTATCAAGGATTGCAAAAGATGAATTCCATTTGGATTCAAAGCCTACCATAGGTGTGGAATTTGCTTACAGGAACATTAAGATCAAAGATAAACTTATCAAAGCTCAGATATGGGACACTGCTGGCCAAGAAAGATTTAGAGCTATCACAAGCTCATACTACAGAGGAGCATTAGGAGCAATGCTAGTGTATGACATAACAAGGAGAACAACATTTGTAAATGTTAGAAAATGGTTACATGAGCTAAGAGAATCTGAAAATGAAGACATGTTGGTTATTATAGTGGGGAACAAATCTGATTTGGGTCAATCAAGGGAAGTTGAGAAAGAAGAAGGAGAAGTGTTTGCAAAAACAAAAGGACTATGTTTCATGGAAACCTCAGCTATGCAAAATCTGAATGTTGAAGAAGCTTTCTTACAAATGATTACTAATATTCATAATATCATAAGCCAAAAAACATTGGAAGCCAAAATGAATGAGACAACATTAAATCTTTCAAGTGGAAAGAAGATTCATATAGCTGATGATGAAGTTACTGCTACTAAACAAGGAAATTGCTGTTCAAAATGA 651 0.3518 MGGYDEECDYLFKCVLIGDSGVGKSNLLSRIAKDEFHLDSKPTIGVEFAYRNIKIKDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRRTTFVNVRKWLHELRESENEDMLVIIVGNKSDLGQSREVEKEEGEVFAKTKGLCFMETSAMQNLNVEEAFLQMITNIHNIISQKTLEAKMNETTLNLSSGKKIHIADDEVTATKQGNCCSK 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0464 216 SMART rab_sub_5 12 175 - -
Lal8g0464 216 ProSiteProfiles small GTPase Ras family profile. 6 216 IPR001806 GO:0003924|GO:0005525
Lal8g0464 216 Pfam Ras family 13 173 IPR001806 GO:0003924|GO:0005525
Lal8g0464 216 ProSiteProfiles small GTPase Rho family profile. 5 173 - -
Lal8g0464 216 ProSiteProfiles small GTPase Rab1 family profile. 7 214 - -
Lal8g0464 216 CDD Rab11_like 9 173 - -
Lal8g0464 216 PANTHER DRAB5-RELATED 4 215 - -
Lal8g0464 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 186 IPR027417 -
Lal8g0464 216 SMART rho_sub_3 14 175 IPR001806 GO:0003924|GO:0005525
Lal8g0464 216 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 4 215 - -
Lal8g0464 216 SMART arf_sub_2 1 176 - -
Lal8g0464 216 SMART ran_sub_2 17 208 - -
Lal8g0464 216 TIGRFAM small_GTP: small GTP-binding protein domain 10 165 IPR005225 GO:0005525
Lal8g0464 216 SMART ras_sub_4 9 175 - -
Lal8g0464 216 Gene3D - 4 214 IPR027417 -
Lal8g0464 216 PRINTS Transforming protein P21 ras signature 12 33 - -
Lal8g0464 216 PRINTS Transforming protein P21 ras signature 35 51 - -
Lal8g0464 216 PRINTS Transforming protein P21 ras signature 53 75 - -
Lal8g0464 216 PRINTS Transforming protein P21 ras signature 115 128 - -
Lal8g0464 216 PRINTS Transforming protein P21 ras signature 150 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0464 Lal-Chr8 3101627 3105480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0464 13 165 EF-hand Containing Proteins AT5G27540 26.220 7.56e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0464 K07976 - gmx:100815793 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0464 8 3101627 3105480 Lal8g0464 8 3101627 3105480 ECH