LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0456	ATGGCGGCAATCGCAGTTCCTCAACCCCGATCTTCCAAGACGGAATCCTATACTGATAACAAGCGCAAGGAGGACATTCGCCATTCCAACATCGCCGCCGCGAAATCCGTCGCCGACGCCGTCCGCACTAGTCTTGGCCCCAAAGGTATGGACAAGATGATCTCCACCTCCTCCGGAGACGTCATCATCACCAACGATGGTGCCACCATCCTCAACAACATGCAACTTCTCCAACCCGCCGCGAAGATGCTCGTCGAACTTTCAAAATCTCAAGACGCCGCTGCCGGAGATGGAACAACCACCGTCGTCGTCATCGCTGGAGCTCTCCTCGACAGTTGTCGTCTCCTCCTCACCCGTGGCATTCACCCCACCGTCGTCTCTGACTCCCTCCACAAAGCTGCCGTCAAAGCCATTGACATCCTTGTTGCCATGGCGGTTCCCGTTGAACTCGGAGATCGCGAATCGCTTGTGAAATCCGCGAGCACTTCACTTAACAGCAAGGTAGTTAGTCAATACTCCACGCTCCTCGCTCCCCTCGCCGTCGACGCTGTCACCTCCGTCGTGGACCCGGAGAAACCTGAGCAGGTTGATCTTCGCGATATAAAGATCGTGAAGAAGCTCGGTGGCACTGTGGATGATACCCAGCTTGTGAAGGGTTTGGTTTTCGATAAGAAGGTGAGCCATGCTGCTGGTGGACCTACTAGAATGGAAAATGCTAAAATTGGTGTGATTCAGTTTCAGATTTCGCCACCGAAAACAGATATCGAACAGAGCATTGTAGTCTCTGATTATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGAAGTTATATTCTTGGTATGATTAAGAAGATTAAGGGAACTGGTTGTAATGTGCTTTTGATTCAAAAGAGTATTTTGAGGGATGCTGTTACTGATTTGTCTTTGCATTATCTTGCTAAGGCTAAGATTTTGGTGATTAAGGATGTTGAGAGAGATGAGATAGAGTTCATTACCAAGACTTTGAATTGTCTGCCTATTGCAAATATCGAGCATTTTCGTGCTGAGAAGTTGGGTCAGGCTGATCTTGTGGAGGAGGTGTCCCTTGGGGATGGAGGGAAGATTGTGAAGATTAGTGGGATTAAGGATATGGGGAGGACTTCGACTGTGCTTGTTCGTGGATCGAACCAGTTGGTGATTGATGAGGCTGAGAGGAGTTTGCATGATGCTTTGTGTGTTGTGAGGTGTTTGGTGAACAAGAGGTTTTTAATTGCTGGAGGTGGTGCTCCGGAGATTGAGCTGTCTAGACAATTGGGTGCTTGGGCTAAGGTCTTGCATGGGATGGAGGGTTACTGTATTCGGGCATTTGCTGAGTCGCTTGAAGTCATTCCTTATACTCTGGCTGAGAATGCGGGGTTGAACCCGATTGCTATTGTTACTGAGCTGAGGAATCGTCATGCACAGGGTGAGATTAATGCTGGAATAAATGTGAGGAAGGGTCAGATTACTAACATCTTGGAGGAGAATGTGGTGCAGCCACTGTTGGTTAGTACAAGTGCTATCACCTTGGCAACAGAGTGTGTTCGGATGATTTTGAAGATTGATGATATTGTAACCGTGAGGTAG	1605	0.4835	MAAIAVPQPRSSKTESYTDNKRKEDIRHSNIAAAKSVADAVRTSLGPKGMDKMISTSSGDVIITNDGATILNNMQLLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLDSCRLLLTRGIHPTVVSDSLHKAAVKAIDILVAMAVPVELGDRESLVKSASTSLNSKVVSQYSTLLAPLAVDAVTSVVDPEKPEQVDLRDIKIVKKLGGTVDDTQLVKGLVFDKKVSHAAGGPTRMENAKIGVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKGTGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGQADLVEEVSLGDGGKIVKISGIKDMGRTSTVLVRGSNQLVIDEAERSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAESLEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0456	534	PANTHER	CHAPERONIN	12	532	IPR017998	GO:0140662
	Lal8g0456	534	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	39	55	IPR017998	GO:0140662
	Lal8g0456	534	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	61	79	IPR017998	GO:0140662
	Lal8g0456	534	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	91	110	IPR017998	GO:0140662
	Lal8g0456	534	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	382	404	IPR017998	GO:0140662
	Lal8g0456	534	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	416	428	IPR017998	GO:0140662
	Lal8g0456	534	Gene3D	-	147	414	IPR027410	-
	Lal8g0456	534	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lal8g0456	534	Gene3D	-	34	531	IPR027413	-
	Lal8g0456	534	SUPERFAMILY	GroEL apical domain-like	213	387	IPR027409	-
	Lal8g0456	534	CDD	TCP1_delta	18	533	IPR012717	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Lal8g0456	534	Pfam	TCP-1/cpn60 chaperonin family	37	532	IPR002423	GO:0005524
	Lal8g0456	534	PANTHER	T-COMPLEX PROTEIN 1 SUBUNIT DELTA	12	532	-	-
	Lal8g0456	534	ProSitePatterns	Chaperonins TCP-1 signature 3.	91	99	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Lal8g0456	534	Gene3D	GroEL	218	378	IPR027409	-
	Lal8g0456	534	SUPERFAMILY	GroEL equatorial domain-like	19	532	IPR027413	-
	Lal8g0456	534	TIGRFAM	chap_CCT_delta: T-complex protein 1, delta subunit	19	533	IPR012717	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Lal8g0456	534	SUPERFAMILY	GroEL-intermediate domain like	152	413	IPR027410	-
	Lal8g0456	534	ProSitePatterns	Chaperonins TCP-1 signature 1.	42	54	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0456	Lal-Chr8	3033536	3035140	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g0456	209	428	EF-hand Containing Proteins	AT3G14270	24.473	1.16e-07	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal8g0456	K09496		-	gmx:100786888	936.021

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal8g0456	8	3033536	3035140	Lal8g0456	8	3033536	3035140	ECH