Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0417 ATGGAAGGAGAAGAAGGTGATCAATCACTATCTCACATCAAAGGTGTTGTTATCATCTCTCTTCCACCACCTGATAACCCTTCTTTAGGCAAAACCATCACTGCTTTCACTTTCTCTAATCCTTCTCCATCTTCTCCTCTTCCTCTCTCATATCAACCTTCTTTACAACAACAGACCCATCAATCACAATACCCATTAAGTCCTTATCTTCACTCTTCATTCACTAGAGTGTTCTTCACTACCCTATTAAAGTTTGTTTCTTTTTTTGGTATTCTCATTTTTACCCTTTTCCTTCATGGTTCACTTTCTTCAACTACCCTTCAGCAGCTACGTGGTTCAAACAGTGATAATGTTGATGATGATGGGCTAACTACTTTTATGTTTCCCTTGTTCCCTAAGTTCGGTATTCATGGACAGAAGGATGTGAAACTTCAACTGGGGAAGCTTCAAAAAGAGAACTTTGTGACTCAGTCAAATGCTAAGGTTACTTCTAGAGTTGTTGATTTATCATCTGCTTTTCCAATTGGTGGAAACGTTTATCCAGATGGGTTGTATTTCACATATTTGCTTCTTGGAAATCCTCCAAAACGTTATTTTCTTGACGTGGATACAGGGAGTGACTTAACTTGGATTCAGTGTGACGCTCCATGCAAAAGTTGTGCTAAGGGAGCACATGTCCTTTACAAGCCAACAAGATCCAATATAGTTCCATCTGTGGATTCTCTCTGCATGGAAGTTCAGAAAAATCAGAAGAATGGGGGATATCATGAAAGTTTACAACAGTGTGATTATGAGATTCAATATGCAGATCATAGTTCCTCCTTGGGAGTTCTCATTAGAGATGAGCTTCATCTTATGACTCGCAATGGATCCAAAACCAATTTAGATTTTGTTTTTGGGTGTGGATATGATCAAGAGGGCTTACTATTGAACACGTTGGCAAAAACAGATGGAATCATGGGACTGAGCAGGGCAAAAGTCAGCTTACCTTACCAGTTAGCTAGTAAAGAGCTTATTAAGAATGTGGTTGGCCATTGCCTAAGCAATGATGAAGTTGGCGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCATATTGGGGTATGAGCTGGGCATCAATGGCCAATGCCCTAACTACAGATTTATACCAAACTGAGATTCTTGGAATAAATTATGGAAATAGACTACTCAGTTTTGAAGGCAGCATGAAATCAGGAAATGTGGTTTTTGATAGTGGCAGTTCTTATACATATTTTCCAAAAGAGGCATACTTGAATCTTGTTGCTTCGCTTAAAGAAGTTTCTTGGTTGGGGCTCATTCAAGATGATTCAGATACAACTTTACCCCTTTGCTGGCGAGCTAACCTCCCAATCAAATCTGTCAAAGATGTTAAGCATTTCTTCAAGACCTTGACTCTTCAGTTTGGAAGCAAGTGGTGGATTTTGTCCACCGTGTTTCATATACCTCCAGAGGGTTACTTGATCATTAGTAAAAAAGGCAATGTTTGTTTGGCTATCCTTGATGGTAGCAATGTACATGATGGATCTTCAATTATACTTGGAGACATTTCATTGCGAGGACAATTGGTTGTGTATGACAATGTGGAACAGAAAATTGGTTGGAAAAGAGAAGATTGTGACATCCCAAGGAGATCAAGGAACACTTACAATTTCTTAACTCATGGCATCTTATGA 1695 0.3912 MEGEEGDQSLSHIKGVVIISLPPPDNPSLGKTITAFTFSNPSPSSPLPLSYQPSLQQQTHQSQYPLSPYLHSSFTRVFFTTLLKFVSFFGILIFTLFLHGSLSSTTLQQLRGSNSDNVDDDGLTTFMFPLFPKFGIHGQKDVKLQLGKLQKENFVTQSNAKVTSRVVDLSSAFPIGGNVYPDGLYFTYLLLGNPPKRYFLDVDTGSDLTWIQCDAPCKSCAKGAHVLYKPTRSNIVPSVDSLCMEVQKNQKNGGYHESLQQCDYEIQYADHSSSLGVLIRDELHLMTRNGSKTNLDFVFGCGYDQEGLLLNTLAKTDGIMGLSRAKVSLPYQLASKELIKNVVGHCLSNDEVGGGYMFLGDDFVPYWGMSWASMANALTTDLYQTEILGINYGNRLLSFEGSMKSGNVVFDSGSSYTYFPKEAYLNLVASLKEVSWLGLIQDDSDTTLPLCWRANLPIKSVKDVKHFFKTLTLQFGSKWWILSTVFHIPPEGYLIISKKGNVCLAILDGSNVHDGSSIILGDISLRGQLVVYDNVEQKIGWKREDCDIPRRSRNTYNFLTHGIL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0417 564 Gene3D Acid Proteases 163 361 IPR021109 -
Lal8g0417 564 PRINTS Pepsin (A1) aspartic protease family signature 191 211 IPR001461 GO:0004190|GO:0006508
Lal8g0417 564 PRINTS Pepsin (A1) aspartic protease family signature 408 419 IPR001461 GO:0004190|GO:0006508
Lal8g0417 564 PRINTS Pepsin (A1) aspartic protease family signature 518 533 IPR001461 GO:0004190|GO:0006508
Lal8g0417 564 SUPERFAMILY Acid proteases 178 546 IPR021109 -
Lal8g0417 564 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 408 419 IPR001969 GO:0004190|GO:0006508
Lal8g0417 564 PANTHER ASPARTYL PROTEASES 20 550 IPR001461 GO:0004190|GO:0006508
Lal8g0417 564 Gene3D Acid Proteases 368 547 IPR021109 -
Lal8g0417 564 ProSiteProfiles Peptidase family A1 domain profile. 185 542 IPR033121 -
Lal8g0417 564 Pfam Xylanase inhibitor C-terminal 387 542 IPR032799 -
Lal8g0417 564 Pfam Xylanase inhibitor N-terminal 185 361 IPR032861 -
Lal8g0417 564 PANTHER ASPARTYL PROTEASE APCB1 20 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0417 Lal-Chr8 2809600 2813857 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0417 156 547 Miscellaneous Gene Families AT1G77480 43.257 1.16e-105 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0417 - - gmx:100810687 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0417 8 2809600 2813857 Lal8g0417 8 2809600 2813857 ECH