Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0182 ATGTACAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCCGTACAAGAAGACAATGCTGGAAACTACGCCAAAGCTTTCCCTCTCTACATGAATGCTTTGGAATATTTCAAAACACATCTCAAGTATGAAAAAAACCCTAAAATCAGGGAAGCTATCACGATGAAGTTCACTGAGTATCTTCGCCGTGCCGAGGAGATCCGCACCGTCCTCGATGAAGGTGGGCCTGGGCCTTCCTCTAACGGAGATGCGGCTGTTGCGACGCGGCCCAAGACTAAGCCCAAAGACGGTGGTGGCGAAGGCGATGGGGAGGATCCGGAACAGGCGAAGCTGCGGGCCGGGTTGAATTCGGCGATCATAAGGGAGAAACCGAATGTGAATTGGAACGATGTTGCTGGATTGGAGAGTGCTAAGCAGGCTTTGCAGGAGGCTGTAATTTTGCCTGTCAAGTTTCCTCAGTTCTTTACTGGTAAAAGACGACCGTGGAGAGCGTTTTTGTTGTATGGACCTCCTGGAACAGGGAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCCACGTTTTTCAGTATTTCTTCATCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCTCGAGACAATGCCCCTTCTATCATATTTATTGATGAAATAGATTCCCTATGCGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTTCAGATGCAGGGAGTTGGAAACAATGATGAGAAAGTTCTTGTTCTTGCAGCCACAAATACACCCTATGCCTTGGACCAGGTGCATCTAGGAGACACTCCTCATAATTTGACTGAAAGTGATTTTGAACACTTGGCTAGCAAGACAGAGGGGTTTTCTGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTACGCAAAACACAAGATGCCATGTTCTTCTTTAAGAGTTCTGAGGGTATGTGGATCCCGTGTGGACCAAAGCAACAGGGTGCAGTACAAATCACAATGCAGGAGCTTGCTGTGAAAGGACTCGCTTCTAAGATCCTTCCACCCCCTATTACAAGAACTGATTTTGACAAGGTACTCGCTAGACAAAGGCCTACAGTAAGCAAAGGTGACCTTGAGGTTCACGAGAGATTCACAAAAGAGTTTGGAGAGGAAGGTTAA 1230 0.4618 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITMKFTEYLRRAEEIRTVLDEGGPGPSSNGDAAVATRPKTKPKDGGGEGDGEDPEQAKLRAGLNSAIIREKPNVNWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDNAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDEKVLVLAATNTPYALDQVHLGDTPHNLTESDFEHLASKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSSEGMWIPCGPKQQGAVQITMQELAVKGLASKILPPPITRTDFDKVLARQRPTVSKGDLEVHERFTKEFGEEG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0182 409 SMART smart 2 79 IPR007330 -
Lal8g0182 409 Pfam Vps4 C terminal oligomerisation domain 342 406 IPR015415 -
Lal8g0182 409 MobiDBLite consensus disorder prediction 72 110 - -
Lal8g0182 409 Gene3D - 6 75 - -
Lal8g0182 409 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 283 - -
Lal8g0182 409 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 283 409 - -
Lal8g0182 409 SMART AAA_5 163 312 IPR003593 -
Lal8g0182 409 MobiDBLite consensus disorder prediction 91 110 - -
Lal8g0182 409 PANTHER AAA DOMAIN-CONTAINING 283 409 - -
Lal8g0182 409 PANTHER AAA DOMAIN-CONTAINING 1 283 - -
Lal8g0182 409 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lal8g0182 409 Gene3D - 125 283 IPR027417 -
Lal8g0182 409 CDD AAA 134 282 - -
Lal8g0182 409 Gene3D - 285 385 - -
Lal8g0182 409 CDD MIT_VPS4 4 77 IPR045253 -
Lal8g0182 409 SUPERFAMILY MIT domain 2 82 IPR036181 -
Lal8g0182 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 392 IPR027417 -
Lal8g0182 409 Pfam ATPase family associated with various cellular activities (AAA) 168 283 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0182 Lal-Chr8 1224064 1228189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0182 162 330 Calmodulin-binding Proteins AT3G56690 33.163 9.70e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0182 K12196 - gmx:100788150 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0182 8 1224064 1228189 Lal8g0182 8 1224064 1228189 ECH
Lal8g0182 8 1224064 1228189 Lal10g1151 10 18201211 18205127 ECH
Lal25g0234 25 1615727 1620710 Lal8g0182 8 1224064 1228189 LSH
Lal10g1151 10 18201211 18205127 Lal8g0182 8 1224064 1228189 LSH
Lal8g0182 8 1224064 1228189 Lal9g0323 9 2134102 2138831 PCT
Lal9g0323 9 2134102 2138831 Lal8g0182 8 1224064 1228189 PCT