Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1395 ATGAGCAACTCCGAAGCACGATGGGTTTCATTGTTGAGCAAATGCATCAGTCTCAGACCCACCAAGCAAGTCCACACCCATATCTACCAAAACGGTCTTCATTCTGATTCCTTGGTCTTGGGGAAGCTTCTTCTTCACTGTGCCATTTCCATCTCAGATGCTCTTCACTATGCTCAACGTCTCTTTCAACACTTCCCTTACCCTGACACTTTCATGTACAACACCCTCATTCGAGGACTCGCTGAATCTTATACTCCTCTCCATTGCATTCACCCTTTCATCCAAATGCTTCGTCGCCGACCTACCTTTTCCCCAGATAGTTTCTCATTCGCCTTTGCGCTCAAAGGTGTTGCTAACTGCGGTAATTTCAGAGCTGGAATTCAGTTGCATTCTCAAGCCTTGTTTTATGGTTATAATACCCATGTTTTTGTTGGGACAACATTGATTAGTATGTATGCTGAATGTGGGAGTTCTGATTATGCCAGACAGGTGTTCGAGGAAATGCCTGAACCAAATGTTGTCACGTGGAACGCTCTTGCCACTGCGGCTTTTAGGTGTGGGGATGTGGAGGGTGCAAGGGATGCGTTTCAACGGATGCCCATTAGGAATTTGACCTCATGTAATTTGTTACTTGCCGGTTATGGTAAAGCAGGCAAGCTTGAGTTGGCAAGACAAGTTTTTTCTGAAATGCCTATGAAAGATGATGTTTCTTGGAGCACTATGATTGTTGCTTTTGCTCATAATGGTTCTTTTGATGAGGCTTTTGGATTTTTCAGGGAGTTGCTGTGCGTGGGAATCAGGCCGAACGAGGTGAGCCTAACAGGGGTTTTGTCTGCTTGCGCACAAGCTGGGGCGTTTGAGTTTGGGAAGATTTTACATTGTTTTATAGAGAAATCTGGATTTCTTTATATTGCTTCTGTGAATAATGCTCTCATAGATACCTACTCCAAATGTGGAAATGCAGCTATGGCTAGGTTGGTCTTTCAAAACATGCCGGTGACAAGGAGCATTGTATCTTGGACATCGATGATTGCAGGTCTTGCAATGCATGGTTATGGAGAAGAGGCGATGCAACTTTTTCATGAGATGGAGGAAGCTGGAGTTAGGCCGGACGGGATTACCTTTATCTCTCTCCTATATGCTTGTAGCCATAGTGGCATGGTTGAACAAGGGTGTGCTTACTTTTCAAAGATGAAAAATATGTATGGTATTGAACCAGCCATTGAGCATTACGGTTGTATGGTTGATCTGTATGGTCGAGCTGCTAAGTTGCAGAAGGCCTATGAATTTGTATGTCAAATGCCAGTTTCTCCTAATGCAATCATCTGGAGGACTCTCCTGGGGGCTTGTAGCATTCATGGTAACATTGAATTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAAACAATTCTGGTGACCATGTATTACTTTCAAATGTTTATGCCACCGCGGGGAAATGGAAGGATGTTGTCAGCATAAGGAGAACAATGACGGAACAAAGCATGAAAAAAACTCCTGGTTGGAGCATGATTGAAATTGACAAGGTCATTTACGGTTTTGTGGCAGGTGAAAAGCCTAACGAGGTTACGGAAGAGGCTCATAATAAACTGAGGGAAATAATGTTGAGACTGAGAGTAGAAGCAGGTTATGCACCACAGATAAGGAGTGTCTTGCATGACATTGAAGAGGAAGAAAAAGAAGATTCAGTGTCTAAGCACAGTGAGAAGCTTGCTGCAGCTTTTGGAATAGAAAAGCTTCCGAAGGGAAGGATTTTGAGAATAGTAAAGAACCTAAGGGTTTGTGGGGATTGTCATACTGTTATGAAGCTCATTTCTAAAGTTTATGAAGTAGAGATCATTGTGAGAGATAGAAGCCGCTTCCACTCATTCAAAGATGGATTTTGTTCTTGTAGAGATTACTGGTGA 1935 0.432 MSNSEARWVSLLSKCISLRPTKQVHTHIYQNGLHSDSLVLGKLLLHCAISISDALHYAQRLFQHFPYPDTFMYNTLIRGLAESYTPLHCIHPFIQMLRRRPTFSPDSFSFAFALKGVANCGNFRAGIQLHSQALFYGYNTHVFVGTTLISMYAECGSSDYARQVFEEMPEPNVVTWNALATAAFRCGDVEGARDAFQRMPIRNLTSCNLLLAGYGKAGKLELARQVFSEMPMKDDVSWSTMIVAFAHNGSFDEAFGFFRELLCVGIRPNEVSLTGVLSACAQAGAFEFGKILHCFIEKSGFLYIASVNNALIDTYSKCGNAAMARLVFQNMPVTRSIVSWTSMIAGLAMHGYGEEAMQLFHEMEEAGVRPDGITFISLLYACSHSGMVEQGCAYFSKMKNMYGIEPAIEHYGCMVDLYGRAAKLQKAYEFVCQMPVSPNAIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYATAGKWKDVVSIRRTMTEQSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHNKLREIMLRLRVEAGYAPQIRSVLHDIEEEEKEDSVSKHSEKLAAAFGIEKLPKGRILRIVKNLRVCGDCHTVMKLISKVYEVEIIVRDRSRFHSFKDGFCSCRDYW 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1395 644 Gene3D Tetratricopeptide repeat domain 399 576 IPR011990 GO:0005515
Lal7g1395 644 Gene3D Tetratricopeptide repeat domain 297 398 IPR011990 GO:0005515
Lal7g1395 644 Pfam DYW family of nucleic acid deaminases 552 644 IPR032867 GO:0008270
Lal7g1395 644 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Lal7g1395 644 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Lal7g1395 644 PANTHER - 12 585 - -
Lal7g1395 644 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Lal7g1395 644 Gene3D Tetratricopeptide repeat domain 135 203 IPR011990 GO:0005515
Lal7g1395 644 Gene3D Tetratricopeptide repeat domain 21 134 IPR011990 GO:0005515
Lal7g1395 644 Pfam PPR repeat family 336 383 IPR002885 -
Lal7g1395 644 Pfam PPR repeat family 233 281 IPR002885 -
Lal7g1395 644 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Lal7g1395 644 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Lal7g1395 644 TIGRFAM PPR: pentatricopeptide repeat domain 206 235 IPR002885 -
Lal7g1395 644 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Lal7g1395 644 Pfam PPR repeat 410 435 IPR002885 -
Lal7g1395 644 Pfam PPR repeat 146 170 IPR002885 -
Lal7g1395 644 Pfam PPR repeat 174 200 IPR002885 -
Lal7g1395 644 Pfam PPR repeat 206 232 IPR002885 -
Lal7g1395 644 Pfam PPR repeat 309 331 IPR002885 -
Lal7g1395 644 Pfam E motif 453 515 IPR046848 -
Lal7g1395 644 Gene3D Tetratricopeptide repeat domain 204 296 IPR011990 GO:0005515
Lal7g1395 644 PANTHER OS01G0913400 PROTEIN-RELATED 12 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1395 Lal-Chr7 18928690 18930624 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1395 28 644 Glycoside Hydrolase AT3G49170 33.383 1.28e-121 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1395 - - lja:Lj4g3v1632020.2 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1395 7 18928690 18930624 Lal7g1395 7 18928690 18930624 ECH