Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1389 ATGGTACGTGCAGTTTGGTTCTCACACTCACAACGTTTTAGTCTCCATTGTCTTTCTCGTTTCAATGCCACCATTGCTATTCCTCATGCACCACTTTTTCCTCAATTCAATGAAGAAATGATTATTTCTGCAATAAAATCCGTTTCTCGCAAGACCCAGTTGCTTCAAATCCACGCTCAAATTCTTCGCACGACCCTTATTGAATACCCTTATGTTTCTCTCCAATTCTTGTCCCGTGTTGCTCCCTCTGGCCCATTGCAAGATCCCACCTATTCTCAACGTTTCTTCGAGCAAATCAACCACCCTTCGGTTTCTCATTACAACACTATGATCAGAGCCTTTTCCATGAGCCATAAACCTCAAAAGGGTCTTTTTTTATATCGAGATATGAGAATACGAGGAATTTCTCCAGACCCATTATCATCTACCTCTGCTATCAAGTGCTGCATCAAGTTTCTATATCTTCTTGGTGGAGTCCAGGTTCATTGCAATGTCTTCAAAGATGGGCATCAACTCGATACGCTTTTGCTCACTGCTATCATGGACTTGTATTCACAATGTAGGAAAGGTGATGATGCGTGTAATGTGTTCGATGAAATGCCTTATAGAGATACTGTTGCTTGGAATGTGATGATCTCTTGCTGTATTCGTAATAACCGGAAAAGGGATGCTTTGAGTTTGTTTGATGTTATGCAGAGTGAAAGTAGTAGATGTGAGCCTGATGATGTTACTTGCTTGCTTCTTCTTCAAGCTTGTGCTCATTTGAATGCCTTGGGATTTGGTGAGCGAATTCATGGATATATTGTGGATAGTGGTTATGGGGGTGCTCAAAATTTATCTAATTCTCTCATATATATGTATTCAAGGTGTGGTTGTTTAGATAAGGCTTATGAGGTGTTTCGCGGGATGCGCAGTAAGAGTGTGGTTTCATGGAGTGCAATGATCTCTGGTTTGGCATCGAATAGACATGGGAGAGAAGCTATTGCAGCATTTGAAGATATGCTGAGAATTGGCATTACGCCTGATGACCAGACGTTCACAGGAATTCTCTCTGCTTGCAGTCATTCTGGGTTGGTGAATGAGGGAATGTCTTTTTTTGAACGTATGGGCAGAGAGTTTGGGATAACTCCCAACATCCATCATTATGGATGCATGGTTGATCTCCTGGGTCGTGCTGGTTTACTTGATAAGGCCTATCAGCTTATTACTTCAATGGTGGTGAAGCCAGATTCGACAATATGGAGAACCTTGCTTGGAGCATGCAGAATTCACGGTAATGTTGCACTTGGTGAACGAGTAATTGGGCATTTGATTGAATTGAAAGCTCAAGAAGCTGGGGATTATGTTTTGCTTCTAAATATTTATTCTTCAGCTGATCACTGGGAAAAGGTAGCAGAAGTGAGAAAACTAATGAAAGATAATGCAATCCAAACCACACCTGGTTGTAGCACAATTGATTTGAAAGGAGTAGTGCATGAGTTTGTTGTGGATGATGTTTCACATCCGAGAAAGGTAGAGATTTACAAGGTACTGGATGAGATTAATATGCAGCTGAAGATTGCGGGTTATATGGTCGAACCTTCATCTGAGTTACACAAGATAGATGACAGAGAGAAGGGGTATGTACTCTCTCATCACAGTGAAAAATTGGCTATTGCCTTTGGGGTTCTTGCTACTCCACCTGGCACAAAATTGAGAGTGGCCAATAATCAACGTATATGTGTTGATTGCCACAATTTCCTTAAACTTTTCTCTGAGGTTTACAACCGTGATGTGATCCTTAGGGACCATAATCGGTTCCACCACTTCCGAGGAGGGCACTGCTCCTGTACTGACTATTGGTAG 1845 0.4173 MVRAVWFSHSQRFSLHCLSRFNATIAIPHAPLFPQFNEEMIISAIKSVSRKTQLLQIHAQILRTTLIEYPYVSLQFLSRVAPSGPLQDPTYSQRFFEQINHPSVSHYNTMIRAFSMSHKPQKGLFLYRDMRIRGISPDPLSSTSAIKCCIKFLYLLGGVQVHCNVFKDGHQLDTLLLTAIMDLYSQCRKGDDACNVFDEMPYRDTVAWNVMISCCIRNNRKRDALSLFDVMQSESSRCEPDDVTCLLLLQACAHLNALGFGERIHGYIVDSGYGGAQNLSNSLIYMYSRCGCLDKAYEVFRGMRSKSVVSWSAMISGLASNRHGREAIAAFEDMLRIGITPDDQTFTGILSACSHSGLVNEGMSFFERMGREFGITPNIHHYGCMVDLLGRAGLLDKAYQLITSMVVKPDSTIWRTLLGACRIHGNVALGERVIGHLIELKAQEAGDYVLLLNIYSSADHWEKVAEVRKLMKDNAIQTTPGCSTIDLKGVVHEFVVDDVSHPRKVEIYKVLDEINMQLKIAGYMVEPSSELHKIDDREKGYVLSHHSEKLAIAFGVLATPPGTKLRVANNQRICVDCHNFLKLFSEVYNRDVILRDHNRFHHFRGGHCSCTDYW 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1389 614 TIGRFAM PPR: pentatricopeptide repeat domain 107 138 IPR002885 -
Lal7g1389 614 TIGRFAM PPR: pentatricopeptide repeat domain 281 309 IPR002885 -
Lal7g1389 614 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Lal7g1389 614 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Lal7g1389 614 TIGRFAM PPR: pentatricopeptide repeat domain 206 241 IPR002885 -
Lal7g1389 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Lal7g1389 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Lal7g1389 614 Pfam PPR repeat family 204 253 IPR002885 -
Lal7g1389 614 Pfam PPR repeat family 306 354 IPR002885 -
Lal7g1389 614 Gene3D Tetratricopeptide repeat domain 161 259 IPR011990 GO:0005515
Lal7g1389 614 Gene3D Tetratricopeptide repeat domain 41 160 IPR011990 GO:0005515
Lal7g1389 614 Gene3D Tetratricopeptide repeat domain 276 493 IPR011990 GO:0005515
Lal7g1389 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Lal7g1389 614 Pfam PPR repeat 106 135 IPR002885 -
Lal7g1389 614 Pfam PPR repeat 178 201 IPR002885 -
Lal7g1389 614 Pfam PPR repeat 381 406 IPR002885 -
Lal7g1389 614 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 34 606 - -
Lal7g1389 614 Pfam DYW family of nucleic acid deaminases 522 614 IPR032867 GO:0008270
Lal7g1389 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 377 IPR002885 -
Lal7g1389 614 PANTHER OS08G0434000 PROTEIN 34 606 - -
Lal7g1389 614 Pfam E motif 424 486 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1389 Lal-Chr7 18904454 18906298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1389 35 614 Glycoside Hydrolase AT3G49170 32.879 2.44e-112 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1389 - - gmx:100788135 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1389 7 18904454 18906298 Lal7g1389 7 18904454 18906298 ECH