Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0979 ATGTGCCCTTCTGGCCGGAGCCTCCGTCCTACCTCAACTTCCTACTCCGCCACATCAGATTTCCGGCCAGCATTCGACATCCTAGACGCTGACCACGACGGCAAAATAAGCCGCGATGACCTCCGCGCATTCTTCATCGGCATGTACGGCTCCGATTCTGGCGGAGACGACACTATCGGAGCAATGATGATGTTGGCAGACACGAACAATAACGGTTTCGTGGAGTACGAGGAGTTCGAGCACGTGGTGACGGGGGCAAGAAGAGCGTTAGGTTGTGGGGCCATGGAAGATGTATTTAGGGTGATGGATAAGGACGGAGACGGCATGCTCAGCCACCAGGATTTGAAGAGTTACATGGCTTTGGCTGGTTTCTCCGCCACCGACGAGGAGATCAACGCCATGATCAAATTTGGCGGCGGCGACCAAAACGGCGGCGTTAGTTTCGATGGTTTGCTTCGTATATTAGCTCTTGATGATTCCTTATCTAAATAA 492 0.5285 MCPSGRSLRPTSTSYSATSDFRPAFDILDADHDGKISRDDLRAFFIGMYGSDSGGDDTIGAMMMLADTNNNGFVEYEEFEHVVTGARRALGCGAMEDVFRVMDKDGDGMLSHQDLKSYMALAGFSATDEEINAMIKFGGGDQNGGVSFDGLLRILALDDSLSK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0979 163 ProSitePatterns EF-hand calcium-binding domain. 29 41 IPR018247 -
Lal7g0979 163 Pfam EF hand 96 120 IPR002048 GO:0005509
Lal7g0979 163 CDD EFh 96 156 IPR002048 GO:0005509
Lal7g0979 163 ProSiteProfiles EF-hand calcium-binding domain profile. 16 51 IPR002048 GO:0005509
Lal7g0979 163 Pfam EF-hand domain pair 21 83 IPR002048 GO:0005509
Lal7g0979 163 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Lal7g0979 163 SMART efh_1 94 122 IPR002048 GO:0005509
Lal7g0979 163 SMART efh_1 58 86 IPR002048 GO:0005509
Lal7g0979 163 SMART efh_1 130 158 IPR002048 GO:0005509
Lal7g0979 163 SMART efh_1 20 48 IPR002048 GO:0005509
Lal7g0979 163 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Lal7g0979 163 PANTHER CALCIUM-BINDING PROTEIN CP1 1 160 - -
Lal7g0979 163 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Lal7g0979 163 PANTHER TROPONIN 1 160 - -
Lal7g0979 163 SUPERFAMILY EF-hand 14 155 IPR011992 -
Lal7g0979 163 CDD EFh 20 79 IPR002048 GO:0005509
Lal7g0979 163 ProSiteProfiles EF-hand calcium-binding domain profile. 95 125 IPR002048 GO:0005509
Lal7g0979 163 Gene3D - 5 162 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0979 1 155 EF-hand Containing Proteins AT5G49480 55.000 1.28e-53 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0979 K02183 - gmx:100527230 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0979 7 16071171 16071662 Lal7g0979 7 16071171 16071662 ECH