Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0927 ATGGCCAAAGATACAAGTAATGGGAAAGAAGAATACATAAGAGTACCTAAGGGCACAGCTAAGGGCACAACCCTTAAATTTCCGGGGTGGTATGCTGATGACTCATGGCCTGGGGAAGCACATATATATAAGATAGACAAGGTCATATTCCAAGGGAAATCAGAATTGCAAGAAATTATGGTATTTGAGTCATCAAGCCATGGCAAGGTTGCAATTCTGGATGGGTATATTCAGTTGACAGAGAGTGATGAATTTGCTTACCAAGAGATGCTTACTCACCTTGCACTTTGTTCCATTTCCAATCCCAACAAGGTACTTCTGGTTGGAGGAGGAGATGGTGGAATTCTCAGAGAAATATCTCGCCATTCTTCTATTGACCATATTGATATTTGTGAAATGGACAAAATGGTGATCGATGTTTATAAGAAGTTTTTCCCAAATATAGCAGTGGGTTATGAAGATCCTAGAGTGCATGTTCATATCATGGATGGAATTCAGTTCATCAGTTCTGTTCCTGAGGGCACTTATGATGCTATCATATTGGATGCTTTCGACCCGATGGGACCTATTGCAGATGTGCTTGCAGATGACTCCTTCTTGGAATCGGTAGCAAAGGCCCTTCGCCCCGGTGGAGTTCTGTCTGCTCCAGCAGATAGCTTTTGGCATAAGGACTTTGTCATTGCAGATACCATAGCAAATTGCAAGAAAATATTCAAAGGCTCAGTTAACTATGCTTGGACCACAGTTCCTACATATGCAAGTGGAGTGATTGGATTCATGCTTTGCTCCACAGAGGGGCCTACAGTGAACTTCAAACACCCAATAAATCCACTGAAACCAGGGCAAAATGGGGTAGCAAAGATACCTCCTAAGTTTTATAACTCAGAGATCCATGCAGCTGCATTCTGTCTCCCTTCTTTTGTCGACAACGGTATCGACCCCTAA 945 0.4265 MAKDTSNGKEEYIRVPKGTAKGTTLKFPGWYADDSWPGEAHIYKIDKVIFQGKSELQEIMVFESSSHGKVAILDGYIQLTESDEFAYQEMLTHLALCSISNPNKVLLVGGGDGGILREISRHSSIDHIDICEMDKMVIDVYKKFFPNIAVGYEDPRVHVHIMDGIQFISSVPEGTYDAIILDAFDPMGPIADVLADDSFLESVAKALRPGGVLSAPADSFWHKDFVIADTIANCKKIFKGSVNYAWTTVPTYASGVIGFMLCSTEGPTVNFKHPINPLKPGQNGVAKIPPKFYNSEIHAAAFCLPSFVDNGIDP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0927 314 PANTHER SPERMIDINE/SPERMINE SYNTHASE 19 311 IPR001045 GO:0003824
Lal7g0927 314 TIGRFAM speE: spermidine synthase 30 307 IPR001045 GO:0003824
Lal7g0927 314 CDD AdoMet_MTases 127 213 - -
Lal7g0927 314 Gene3D Vaccinia Virus protein VP39 81 313 IPR029063 -
Lal7g0927 314 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 105 118 IPR030373 -
Lal7g0927 314 Hamap Polyamine aminopropyltransferase [speE]. 29 313 IPR001045 GO:0003824
Lal7g0927 314 Pfam Spermine/spermidine synthase domain 84 272 - -
Lal7g0927 314 PANTHER SYNTHASE 1, PUTATIVE-RELATED 19 311 - -
Lal7g0927 314 Pfam Spermidine synthase tetramerisation domain 29 81 IPR035246 -
Lal7g0927 314 Gene3D Spermidine synthase, tetramerisation domain 16 80 IPR037163 -
Lal7g0927 314 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 29 310 IPR029063 -
Lal7g0927 314 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 28 264 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0927 Lal-Chr7 15690522 15694811 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0927 K00797 - gmx:100788406 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0927 7 15690522 15694811 Lal7g0927 7 15690522 15694811 ECH