Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0053 ATGGAAGCACAGAGACTGTGGAATCTAACATCTTACCCACTTAAGCGTCTCTTTCTTCACTCTTCATCTTACGCATTTCGTCAAACACCTCGCACTCTCATTATCCGTTCATGCTCTTCTTCAACCACCACTTCCTCCGCCGACAAAGCCGCCGCCAGAGCTTCCGGTCGCAACCGCCGGAACCCCTCCACCACTTCAACTTCGGATAGGGAGGCAATTCGAGCCATTCGATTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTCGATCCATATGCTTATGAATGGGACAAAACTCACAGCGCTACTCAGCTACAAGATATATATAGAGATTTAGGAAATGGCGAGGAATCAAATAGTGAGAATGATCATGTATCTGTCGCAGGAAGGATCGTTGCTAGGAGGGCATTTGGAAAGCTTGCCTTTTTGACACTAAGAGATGATTCGGGGACAATCCAGCTCTACTGTGATAAGGAGAGACTCGTAGGTGATCAGTTTGAGGAGTTGAAGGCACATGTTGATATTGGTGATATACTAGGTGCAAGAGGTTCAATAAAACGCACAGAAAAAGGAGAACTTTCTGTGTGTTTGCTTTCTTTTGCAATACTTACCAAATCTCTGCTTCCATTGCCTGACAAGTATCATGGTCTAACTGATATTGATAAACGCTATCGCCAGAGGTATGTAGATATGATTGCTAATCCAGAGGTAGCAGATGTATTCCGGAAACGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTCTTGGTTTTGTCGAAGTAGAAACTCCAGTTTTGCAGGGAGCAGCTGGAGGAGCCGAAGCCAGACCATTTGTTACATACCATAATACTCTTGGAAGGGACTTATATCTGAGAATTGCAACTGAACTGCATCTAAAGAGAATGCTGGTAGGTGGGTTCGAAAAAGTATATGAGATTGGTCGAATATTTAGAAATGAAGGACTTTCAACTCGTCACAATCCTGAGTTCACAACTATAGAGATGTATGAAGCATACTCGGACTACCAAAGCATGATGAATTTGTCTGAGGAGATCGTCACTCGATGTGCTCTTGCAATTAATGGGAAACTTACCATTGATTATCAGGGAGTAAAGATATGTCTGGAGAGGCCCTGGAGGAGGGAGACCATGCACAACCTTGTTAAAGAAGCTTCTGGTGTTGATTTCAATGATGTGGGAAATGATCTTGAGGTTGCAAAAAAAACTACTCTGAGTGCCCTTGGAAAGGATCTTGATAACAAGGATAAAGCTTCCATTGAAGCATGCCAATCTGTTGGCCACCTTCTTAATGAGGTTTTTGAGATTGTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAGTTGAAATATCTCCGTTGGCTAAACCACACAGAAGATCCACAGGTTTGACCGAGAGATTTGAACTTTTCATTTGTGGCCGTGAGCTAGGCAATGCATTCTCTGAATTGACTGATCCTATAGATCAGAGAGGACGCTTAGAGGATCAAATTAAACAGCATGAAAAGAAGAGAGCAGAAGCTGCTTCAACAACTAGTGATAAGAAGGAAGGAACAGAAAATGAGGATGACTCATATGAAGTGACTCTTGATGAAGACTTTCTAACCGCATTGGAATATGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATCGATAGGCTGGTGATGCTTTTGACAAACTCTCCCAGTATTCGAGATAGAATCTAA 1746 0.4284 MEAQRLWNLTSYPLKRLFLHSSSYAFRQTPRTLIIRSCSSSTTTSSADKAAARASGRNRRNPSTTSTSDREAIRAIRLKKVEELRSKGLDPYAYEWDKTHSATQLQDIYRDLGNGEESNSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLVGDQFEELKAHVDIGDILGARGSIKRTEKGELSVCLLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFVTYHNTLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNLSEEIVTRCALAINGKLTIDYQGVKICLERPWRRETMHNLVKEASGVDFNDVGNDLEVAKKTTLSALGKDLDNKDKASIEACQSVGHLLNEVFEIVVEPKLIQPTFVLDYPVEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIKQHEKKRAEAASTTSDKKEGTENEDDSYEVTLDEDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDRI 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0053 581 SUPERFAMILY Nucleic acid-binding proteins 70 212 IPR012340 -
Lal7g0053 581 MobiDBLite consensus disorder prediction 45 69 - -
Lal7g0053 581 CDD LysRS_N 124 231 IPR044136 GO:0000166
Lal7g0053 581 PRINTS Lysyl-tRNA synthetase signature 256 266 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lal7g0053 581 PRINTS Lysyl-tRNA synthetase signature 272 288 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lal7g0053 581 PRINTS Lysyl-tRNA synthetase signature 301 314 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lal7g0053 581 PRINTS Lysyl-tRNA synthetase signature 319 336 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lal7g0053 581 PRINTS Lysyl-tRNA synthetase signature 452 468 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lal7g0053 581 Pfam OB-fold nucleic acid binding domain 125 195 IPR004365 GO:0003676
Lal7g0053 581 PANTHER LYSINE--TRNA LIGASE 49 579 - -
Lal7g0053 581 Pfam tRNA synthetases class II (D, K and N) 221 579 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lal7g0053 581 MobiDBLite consensus disorder prediction 509 540 - -
Lal7g0053 581 MobiDBLite consensus disorder prediction 509 535 - -
Lal7g0053 581 SUPERFAMILY Class II aaRS and biotin synthetases 219 579 IPR045864 -
Lal7g0053 581 CDD LysRS_core 234 581 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lal7g0053 581 TIGRFAM lysS_bact: lysine--tRNA ligase 74 580 IPR002313 GO:0004824|GO:0005524|GO:0006430
Lal7g0053 581 Hamap Lysine--tRNA ligase [lysS]. 76 580 IPR002313 GO:0004824|GO:0005524|GO:0006430
Lal7g0053 581 Gene3D Bira Bifunctional Protein; Domain 2 215 581 IPR045864 -
Lal7g0053 581 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 241 581 IPR006195 -
Lal7g0053 581 PANTHER LYSYL-TRNA SYNTHETASE 49 579 - -
Lal7g0053 581 Gene3D - 63 214 IPR012340 -
Lal7g0053 581 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0053 Lal-Chr7 481826 497008 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0053 K04567 - gmx:100787720 988.023