Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1143 ATGAAAGCTGAAGAATCAGTGATGAAAACTGAAGCCACAACTGAGGAATCAAACCAAAACCCTAGGCCACGAATTCAGCGGAAAACCGAAGATTCAGTGGTGAAAAACGAAGCCACAATCGCAATCACAGAGAAATCAGGATCAAGAAGCTCTAGATACCATGTTAGAAAAGGCTTAATCAAAACCTGGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGAGAAGAAGAAGAAAATGATTCTATTATTAATCAATTGGAGGGAGAGGGAAAGGGAGAAGGAGAGGGAAAGGGAGAAGGAGAGGGAAAGGGAGAAGGAGAGGGAGTCAAAGACTGCAACACCACACCATTATCTATCATTTTTATTGTTCCCAAGTTTTTTCATCTGCCATTGTCTAAAGATAAACGCACAGGGAAACCGAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACCGTAACATACGAGGACCCACATGCTGCTTTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGTAGTACCATAGGAGTTTATATAGCAGAGTCAAAAAACAAAGATGACCAAACATTCAACCCAGTGGTAGAACCACTTGTTTCTGATAATGTTGGAGTAGAGGAAACTCCTGCGGATGTTAATGGGGGTGGTGGAAGAGGTAGAGGTCGAAATGAAACTTCAGGCAAAGCATGGAAACAGGAGGGTGATTGGATGTGTACGAATACAAGTTGCAACAATGTCAATTTTGCTTTTCGTGGTGCATGCAATCGCTGTGGAACTGCTCGCCCAGCTGGCGCTCCAGGTGCTGCAGGTGGCGGTGGTCGTGGCAAGGGACGTGGTGGGCCGGATACTGGGAGTGCTGGTCGTCCAGGTGGTGGACTCTTTGGCCCCAATGACTGGCCCTGTCCAATGTGTGGAAATATCAATTGGGCAAAGCGTAACAAATGCAATATTTGCAACACCAATAAGCCTGGCACAAGCGAGGGTGGTGTAAGGGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGACGAAGAAGAACTAGAGGAAACTAAACGTCGTAGGCGGGAAGCTGAAGATGATGGTGAACTGTATGATGAGTTTGGAAATCTTAAGAAGAAATTTCGTGCCAAAGCACAACACACTGAAACTGCACGAGTTCTTCCTGGTTCTGGGCGTGCTGGGTGGGAGGTTGAGGAACTAGGTATTTCTTTCATATCTATAATGGGATTGATAGGGATTCTAGAGAAAGGAGTAGAGACAGAGGACGGGAACATAATGATGGTTATAACAGGCACAAAGAGCGAAATGATAAAGATTGGCGAAGAAGTCGAAGTAGAGAGAGGGATCAGGGAAGAGATCGAGACTGGGATTATGATGATCGAGATAGAGATTATGGGCGAGATCGGGACGGAAGTAGACGCCATTATTGAAAATAGCAACAAGTAA 1482 0.448 MKAEESVMKTEATTEESNQNPRPRIQRKTEDSVVKNEATIAITEKSGSRSSRYHVRKGLIKTWREKKKKKKKKKKKRRREEEENDSIINQLEGEGKGEGEGKGEGEGKGEGEGVKDCNTTPLSIIFIVPKFFHLPLSKDKRTGKPKIWLYRDKETNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSTIGVYIAESKNKDDQTFNPVVEPLVSDNVGVEETPADVNGGGGRGRGRNETSGKAWKQEGDWMCTNTSCNNVNFAFRGACNRCGTARPAGAPGAAGGGGRGKGRGGPDTGSAGRPGGGLFGPNDWPCPMCGNINWAKRNKCNICNTNKPGTSEGGVRGGRAGGYKELDEEELEETKRRRREAEDDGELYDEFGNLKKKFRAKAQHTETARVLPGSGRAGWEVEELGISFISIMGLIGILEKGVETEDGNIMMVITGTKSEMIKIGEEVEVERGIREEIETGIMMIEIEIMGEIGTEVDAIIENSNK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1143 493 SUPERFAMILY Ran binding protein zinc finger-like 239 277 IPR036443 -
Lal6g1143 493 MobiDBLite consensus disorder prediction 95 113 - -
Lal6g1143 493 Gene3D - 125 192 IPR012677 -
Lal6g1143 493 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 129 415 - -
Lal6g1143 493 ProSiteProfiles Zinc finger RanBP2 type profile. 245 276 IPR001876 -
Lal6g1143 493 Coils Coil 60 90 - -
Lal6g1143 493 ProSitePatterns Zinc finger RanBP2-type signature. 312 331 IPR001876 -
Lal6g1143 493 SUPERFAMILY RNA-binding domain, RBD 146 203 IPR035979 GO:0003676
Lal6g1143 493 ProSitePatterns Zinc finger RanBP2-type signature. 249 270 IPR001876 -
Lal6g1143 493 MobiDBLite consensus disorder prediction 275 304 - -
Lal6g1143 493 MobiDBLite consensus disorder prediction 1 115 - -
Lal6g1143 493 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 129 415 - -
Lal6g1143 493 SUPERFAMILY Ran binding protein zinc finger-like 303 338 IPR036443 -
Lal6g1143 493 SMART zf_4 310 334 IPR001876 -
Lal6g1143 493 SMART zf_4 247 273 IPR001876 -
Lal6g1143 493 Pfam Zn-finger in Ran binding protein and others 246 275 IPR001876 -
Lal6g1143 493 Pfam Zn-finger in Ran binding protein and others 311 337 IPR001876 -
Lal6g1143 493 Gene3D - 307 338 - -
Lal6g1143 493 Gene3D - 242 278 - -
Lal6g1143 493 MobiDBLite consensus disorder prediction 218 243 - -
Lal6g1143 493 MobiDBLite consensus disorder prediction 52 77 - -
Lal6g1143 493 ProSiteProfiles Zinc finger RanBP2 type profile. 301 337 IPR001876 -
Lal6g1143 493 Coils Coil 352 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1143 Lal-Chr6 8687028 8695597 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1143 - - gmx:100780819 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1143 6 8687028 8695597 Lal6g1143 6 8687028 8695597 ECH