LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g0979	ATGCTTTGTAAATTTCATCTGAAAAAACAGTTCTATTTCCCTCCAACCCATTATTCATTTGATCCTCAATGTTTCACACACTCTTCTCACAAACCCTTTCCATTGATCCCTCAGAGTAGACTCAGAGTTTATGTGCCAGTCCCTGATGAAACCCATTTCAAAGACCCTGACACTGTTCACTTGTTTTGTTCTAAAGCCCTCAAAGTTTCAGCCAAAAAGGCCTTTCTTCCTGAAGGAAAACAGTTACATGCCCATTTGATAAAGCTTGGATTTTGTCATGTGCTGTCTTTGCAAAATCAGATTTTGAGTGTTTATCTTAAATGTAAGGAAACTGGGGATGCAAAGAAACTGTTTGAGAAATTGCCTGGGAGAAATGTGGTGTCTTGGAATATTGTGATTCGTGGTATTGTTGGATGTGGTAATGAAAATGGCACTAATCCACAACTGGGTTTTTCTTATTTTAGGGGGATGTTGTTGGAGAAGGTGGTTCCAGATGGTACAACTTTTAATGCTCTATTTTGTGTGTGTGCTATGTTTCATGATATTAACATGGGTATCCAATTGCATTGTTTGATAGTAAAACTAGGATTTGATATGGATTGTTTTGTTCGTAATGCTCTCATCGGCTTATATGGAAAATGTGGTTCAGTTGAGGAAGCAAAACGGGTCTTTAATGGTGTTCTATGTAAAGATTTTGTTTTGTGGAATGTGATGATTTCTTGCTATGCCTTGAACTGTTTACCAGAAGATGCTTTTGGAACTTTCAACTCAATGCGATTGGATGGAGCAAATGGGGATGAGTTCACTTTGAGCAGCCTGCTTAGTATATGTGATAGTTTGGAATATTATGATTTTGGAAAGCAGGCTCACAGCCTTGCTCTAAGGCAGTCATTTGATTCATATGTTTCGGTAGCTAGTGCATTGATCAACATGTATGCGAAAAATGAAAATATAGTTGATGCACACAATGTATTTGTTAAGATGGCGATTCGAAATGTTGTGGCGTGGAACACCATAATTGTTGGGTGTGGTAATCATGGATATGGGAATGATGTTATGAAGCTTCTCAGGGAGATGCTAAGCGAAGGGTTTCTCCCGGATGAAGTGACTATTTCCAGCACTCTTAGTTCATGTGCCCATGCTTGTGCGATTACTGAAACACTGCAAACGCATGCCTTGGCAGTTAAATTATCATTTCAAGAATTTTTATCTGTTTCAAATTCTTTGATTAGTGCATACTCCAAGTGTGGTAGCATTGCTAGTGCATTTATGTGCTTCAAATTAACTTCAGAAGCTGATGTTATTACATGGACTTCATTGATAAATGCATATGCATTCCATGGTCTTGCCAAAGAAGCAATTGAGATGTTTGAGAAGATGCTATCTAGTGGCAAAATGCCGGATCGAGTTTCTTTTCTTGGTGTTCTCTCTGCTTGTGCTCATTGCGGACTTGTGACTATGGGACTGCACTACTTCAAATTAATGACCAATGTTTATCAGATTGTTCCCGATTCCGAGCATTATACATGCCTTGTTGACCTTCTTGGACGTTACGGTCTTATAGATGAAGCCTTTGAATTCTTGACTTCAATGCCAATGGAAGCTGAACCAAACACATTAGGAGCTTTTATTGGATCTTGCAAACTCCATGCCAATATAGGACTAGCTAAATGCGCAGCAGAAAAGCTGTTCATCAAAGAGCCAGAGAAGATTGTGAACTATGCTGTGATGTCTAACATTTATGCTTCTCACAAACATTGGCATGATGTCGAAAAAGTTCGAAAAATGATCGGAGACAAGCGTGAAGCGAAGGTTCCAGGTTTTAGTTGGATAGAGATTGCAAATGAAGTTTATTCATTTGTATCAAGTGATAAGAATAGCCACCCTAAAGCCTTAGAAATGTATGCTACATTAAAAATGCTGCTTAGGTCAATGAAGGAAGAAATGTTGTGA	1953	0.3861	MLCKFHLKKQFYFPPTHYSFDPQCFTHSSHKPFPLIPQSRLRVYVPVPDETHFKDPDTVHLFCSKALKVSAKKAFLPEGKQLHAHLIKLGFCHVLSLQNQILSVYLKCKETGDAKKLFEKLPGRNVVSWNIVIRGIVGCGNENGTNPQLGFSYFRGMLLEKVVPDGTTFNALFCVCAMFHDINMGIQLHCLIVKLGFDMDCFVRNALIGLYGKCGSVEEAKRVFNGVLCKDFVLWNVMISCYALNCLPEDAFGTFNSMRLDGANGDEFTLSSLLSICDSLEYYDFGKQAHSLALRQSFDSYVSVASALINMYAKNENIVDAHNVFVKMAIRNVVAWNTIIVGCGNHGYGNDVMKLLREMLSEGFLPDEVTISSTLSSCAHACAITETLQTHALAVKLSFQEFLSVSNSLISAYSKCGSIASAFMCFKLTSEADVITWTSLINAYAFHGLAKEAIEMFEKMLSSGKMPDRVSFLGVLSACAHCGLVTMGLHYFKLMTNVYQIVPDSEHYTCLVDLLGRYGLIDEAFEFLTSMPMEAEPNTLGAFIGSCKLHANIGLAKCAAEKLFIKEPEKIVNYAVMSNIYASHKHWHDVEKVRKMIGDKREAKVPGFSWIEIANEVYSFVSSDKNSHPKALEMYATLKMLLRSMKEEML	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g0979	650	Pfam	PPR repeat	205	225	IPR002885	-
	Lal6g0979	650	Pfam	PPR repeat	507	532	IPR002885	-
	Lal6g0979	650	Pfam	PPR repeat	407	427	IPR002885	-
	Lal6g0979	650	Pfam	PPR repeat	233	262	IPR002885	-
	Lal6g0979	650	Pfam	PPR repeat	306	329	IPR002885	-
	Lal6g0979	650	Pfam	PPR repeat family	331	379	IPR002885	-
	Lal6g0979	650	Pfam	PPR repeat family	433	480	IPR002885	-
	Lal6g0979	650	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	433	467	IPR002885	-
	Lal6g0979	650	Gene3D	Tetratricopeptide repeat domain	183	286	IPR011990	GO:0005515
	Lal6g0979	650	Gene3D	Tetratricopeptide repeat domain	287	398	IPR011990	GO:0005515
	Lal6g0979	650	Gene3D	Tetratricopeptide repeat domain	52	182	IPR011990	GO:0005515
	Lal6g0979	650	Pfam	E motif	550	612	IPR046848	-
	Lal6g0979	650	Gene3D	Tetratricopeptide repeat domain	403	642	IPR011990	GO:0005515
	Lal6g0979	650	PANTHER	OS07G0259400 PROTEIN	45	631	-	-
	Lal6g0979	650	PANTHER	OS07G0578800 PROTEIN-RELATED	45	631	IPR045215	GO:0003723\|GO:0009451
	Lal6g0979	650	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	332	366	IPR002885	-
	Lal6g0979	650	TIGRFAM	PPR: pentatricopeptide repeat domain	334	368	IPR002885	-
	Lal6g0979	650	TIGRFAM	PPR: pentatricopeptide repeat domain	435	468	IPR002885	-
	Lal6g0979	650	TIGRFAM	PPR: pentatricopeptide repeat domain	233	262	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g0979	Lal-Chr6	6954475	6956427	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal6g0979	62	647	Glycoside Hydrolase	AT3G49170	31.993	1.14e-98	319

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal6g0979	-		-	gmx:100778378	956.436