Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0933 ATGTGGAACCAACTTCGATTCGCCGCCGCCAACCTCGCCCGATCGCGGTGCTTCTCCACCGTGAATCCTGGTCCATGCATTGTTCACAAGCGCGGTGCCGATATCCTCCACGATCCTTGGTTTAACAAGGATACTGGATTTCCTTTGACTGAAAGAGATCGATTGGGGCTTCGGGGCCTCCTTCCTCCTCGTGTCATATCATTTGAGCAGCAATATGAACGCTTTTGTAAGTTTGAGGCTCTTATTATATATATCTGGATTCTGGTGACTTCTTACCGGTCTTTGGAAAAGAATACTCAGTGCCAACCAGATAATATTGTTTCCCTTGCCAAATGGAGAATCTTAAATAGACTACATGATAGGAATGAGACTTTGTACTACAGAGTTCTTATTGATAATATTGAAGAGTTTGCTCCAATAATATATACTCCTACAGTTGGATTAGTGTGTCAAAATTATTCAGGGCTATTTAGACGTCCACGCGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCTGCTGAAAAGGTAGACATGATTGTCTTGACAGATGGTAGTCGAATCCTTGGGTTAGGTGACCTTGGTGTTCAGGGCATTGGAATACCAATAGGCAAACTTGATATGTATGTTGCTGCTGCTGGTATCAACCCACGAAATATACTACCTGTTATGTTGGATGTTGGTACCAACAATGAAAACCTCCTTGAAGATCGACTTTATTTAGGCCTTCGACAACCAAGGTTGGAAGGTGAAGAGTATCTAGAAATTCTGGATGAATTCATGGATGCTGTTTATGCTCGATGGCCTAAGGCTATTGTGCAGTTTGAAGATTTCCAAATGAAGTGGGCTTTCACAACCCTCGAACGATATCATAAAAGGTTTTGCATGTTTAATGATGATATACAGGGAACTGCTGGTGTTGCACTTGCAGGATTGTTGGGAACTGTAAGAGCCCAAGGTCGACCGTTGTCTGATTTTGTGAAGCAAAAGATAGTGGTGGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTAAAAATGGCTATCCAGGCAGTTTCAAAGATGACAGGGTGCAGTGAATTAGCTGCCAAAAGTCAATTCTTTTTGATTGATAAAGATGGTCTTGTCACAACAGAAAGGAACAATCTAGATCCAGCTGCTGCCCCATTTGCTAAAAATCCTAGAGACCTTGAGGATCTTACTGAGGGTGCTAGTATACTTGAAGTGGTTAAGAAGGTGAAGCCGCATGTTCTCCTAGGTTTGTCTGGGGTTGGTGGTATTTTCAATGAGGAGGTGCTTAAGGCAATGAGAGAGTCTGTTTCAACAAAACCTGCAATCTTTGCTATGTCAAATCCAACCATGAATGCTGAGTGCACTGCTAGTGATGCTTTTAAGCATGCTGGAGAAAATATAGTGTTTGCAAGCGGAAGCCCTTTTGAAAATGTAAATCTTGGTAATGGTAAAGTGGGCCATGTAAATCAAGCAAATAACATGTACCTGTTCCCAGGAATTGGTCTAGGAACTCTTTTGTCAGGTGCTCATCTGATTACAGATAGAATGTTGCAGGCTGCTTCTGAATGCCTTGCTTCATACATGATGGAGGAAGATATCTTGAACGGAATCTTATATCCATCTATCAGCGGCATACGAGATGTCACAGCAGAGGTTGGGGCTGCTGTTCTTCGAGCAGCAGTTGAAGAGGAGCTTGCAGAAGGACAGGGTGATATAGGACCCAAAGAACTTGCACAAATGTCAAAAGAAGAGACTGTGGAGTATGTCAGAAGCAACATGTGGTTCCCTGTGTACTCTCCTCTTGTTCATGAAAAGTAA 1851 0.4284 MWNQLRFAAANLARSRCFSTVNPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYERFCKFEALIIYIWILVTSYRSLEKNTQCQPDNIVSLAKWRILNRLHDRNETLYYRVLIDNIEEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAEKVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPRNILPVMLDVGTNNENLLEDRLYLGLRQPRLEGEEYLEILDEFMDAVYARWPKAIVQFEDFQMKWAFTTLERYHKRFCMFNDDIQGTAGVALAGLLGTVRAQGRPLSDFVKQKIVVVGAGSAGLGVLKMAIQAVSKMTGCSELAAKSQFFLIDKDGLVTTERNNLDPAAAPFAKNPRDLEDLTEGASILEVVKKVKPHVLLGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTASDAFKHAGENIVFASGSPFENVNLGNGKVGHVNQANNMYLFPGIGLGTLLSGAHLITDRMLQAASECLASYMMEEDILNGILYPSISGIRDVTAEVGAAVLRAAVEEELAEGQGDIGPKELAQMSKEETVEYVRSNMWFPVYSPLVHEK 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0933 616 CDD NAD_bind_1_malic_enz 309 607 - -
Lal6g0933 616 PRINTS Malic enzyme signature 125 149 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 PRINTS Malic enzyme signature 185 214 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 PRINTS Malic enzyme signature 221 243 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 PRINTS Malic enzyme signature 280 298 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 PRINTS Malic enzyme signature 305 321 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 PRINTS Malic enzyme signature 339 355 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 PRINTS Malic enzyme signature 448 464 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 PANTHER MALIC ENZYME-RELATED 1 612 - -
Lal6g0933 616 PIRSF ME 9 615 IPR001891 GO:0004470|GO:0004471
Lal6g0933 616 Gene3D - 307 616 - -
Lal6g0933 616 PANTHER MALIC ENZYME 1 612 - -
Lal6g0933 616 SMART Malic_M_2 309 572 IPR012302 GO:0051287
Lal6g0933 616 SMART malic_2 119 299 IPR012301 GO:0004471
Lal6g0933 616 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 16 308 IPR046346 -
Lal6g0933 616 ProSitePatterns Malic enzymes signature. 305 321 IPR015884 GO:0004471
Lal6g0933 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 309 613 IPR036291 -
Lal6g0933 616 Pfam Malic enzyme, N-terminal domain 119 298 IPR012301 GO:0004471
Lal6g0933 616 Gene3D - 30 306 IPR037062 GO:0004471
Lal6g0933 616 Pfam Malic enzyme, NAD binding domain 309 571 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0933 Lal-Chr6 6493515 6499867 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0933 K00028 - gmx:100806545 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0933 6 6493515 6499867 Lal6g0933 6 6493515 6499867 ECH
Lal6g0933 6 6493515 6499867 Lal22g0816 22 6085872 6093506 LSH
Lal6g0933 6 6493515 6499867 Lal6g0933 6 6493515 6499867 PCT
Lal6g0933 6 6493515 6499867 Lal22g0816 22 6085872 6093506 PCT
Lal22g0816 22 6085872 6093506 Lal6g0933 6 6493515 6499867 PCT