Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0874 ATGCACACTCATACACAAGCCTCCTCTTTCATGTTCCATTTGACCCCTTCCCTCTTTTTCTCCGTATTCATCTCTACCACCCGGTTTAGAAACCCGGTCCACCGCTTCAGCTCTCTGTCCCTCGGCTCTTCGCCCAGGAAGCGGAATAGCCTCAAGGTTTTGTGCAAGAGAAGGAAGAAGAAGAAGAACAGGGAGGAGGTTGATTCCTCGTTCCTTGAAGAGGAGATTCTGGAATTCATGCAGAATTCGAATAACCCAAATGTGTTTCCCACAAGGGAAGAACTTGTTGCAGCTGGGAGAGTTGATTTGGTTGAAGCCATTGTGAAAGAAGGAGGGTGGTTCACGCTTGGGTGGGATTTGAATGAAGGGGTGTCTCAGGAAATTGAGGATTTGAATGAAGGGTATCGTGAAATTAAGGATTTTGAAGATGGGATAGGCAATGAGATTGATGGTAATAACGCGACTTGGGCTTATGGGGATAACTCTTTGTCTTCTTTGGATAACTCTTCTCAACAAGATAGATCAGCGGAAATAGAAGCTGGGCAGTCTGGCATTGAGGGTATATTGAATCGGCTGGAGAACGAGAGAAATAATTCTTTCGGACTCGAGTTCAGGGAGAAAGAAGATAGTATGCCTTCCGAAAATAATGTTGATAAAGATCAATGGGATCATAGAACCACAATGGCTGCAGTAGATGCTGTCCTTGAAAATAGTAGCAGACTATCCACAATGAGCCCAACAAGTAATCACAGCAGTGATGGCCAGATCAAACTAGACCAGCATAGATCTGAATTAGGTAGTGATGATTTTAGAAACTCACATAAGGCAGAGGGTTGGAGAACTTGGATTGTTCGGCGGACTGGTTTTACAAATGCAGATTTTGAAGATGCTGAAATTGCTCCCAGTGAAACTCAGAAAGGAGGTGTTAGCGATGTTTCAGGACAGCTGGATCTCCTCAAAATAAGAGAATTTTCTGATGAACCTACAATCAGAGAAACAGGATTTGGTTCTCTTAATAGAAATGCAAATCACAATGACATAAAATCCCGTATCCTGAATCTGGAATCAGAGCTGTCCTCTGTACTGCATTCGTTGAGGTCTAGCTCTAATAAAGTTACAAGCCAGACGGACCAAAAGGGCTCTTCCGGTGATCTATCAGAGCTTTCTGATGCTTGGGAATTCCAGGAAAATGAGATCATAAATGCTCAGGACAGACTGCGTACAATACGTGCTAAGTTGGCGGTATTAGAAGGAAAGATGACATTGGCAATAATGGATGCGCAAAAAATAGTGGAGGAGAAGCAGAAGAGGATTAACGATGCCCACAGAGCTTTGCAACTTCTGAAGACTACTTCTGTGGTTTGGCCTAATACTGCTTCCGAAGTGCTTTTAGTAGGATCATTTGATGGCTGGTCCACCCAGAGAAAGATGGATAAGTCAAGTACTGGCATATTTTCTGTGTGCTTGCAGCTGTATCCTGGAAAATACGAGATCAAGTTCATTGTTGATGGTGAATGGAAAATTGATCCGATGCTCCCTATTGTTGACAATAATGGCCATGTGAATAATCTTCTTGTCGTTTATGATTGA 1590 0.4308 MHTHTQASSFMFHLTPSLFFSVFISTTRFRNPVHRFSSLSLGSSPRKRNSLKVLCKRRKKKKNREEVDSSFLEEEILEFMQNSNNPNVFPTREELVAAGRVDLVEAIVKEGGWFTLGWDLNEGVSQEIEDLNEGYREIKDFEDGIGNEIDGNNATWAYGDNSLSSLDNSSQQDRSAEIEAGQSGIEGILNRLENERNNSFGLEFREKEDSMPSENNVDKDQWDHRTTMAAVDAVLENSSRLSTMSPTSNHSSDGQIKLDQHRSELGSDDFRNSHKAEGWRTWIVRRTGFTNADFEDAEIAPSETQKGGVSDVSGQLDLLKIREFSDEPTIRETGFGSLNRNANHNDIKSRILNLESELSSVLHSLRSSSNKVTSQTDQKGSSGDLSELSDAWEFQENEIINAQDRLRTIRAKLAVLEGKMTLAIMDAQKIVEEKQKRINDAHRALQLLKTTSVVWPNTASEVLLVGSFDGWSTQRKMDKSSTGIFSVCLQLYPGKYEIKFIVDGEWKIDPMLPIVDNNGHVNNLLVVYD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0874 529 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 16 527 - -
Lal6g0874 529 Coils Coil 399 419 - -
Lal6g0874 529 Pfam Glycogen recognition site of AMP-activated protein kinase 451 527 IPR032640 -
Lal6g0874 529 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 16 527 - -
Lal6g0874 529 Coils Coil 424 451 - -
Lal6g0874 529 CDD E_set_AMPKbeta_like_N 450 527 - -
Lal6g0874 529 Gene3D Immunoglobulins 448 528 IPR013783 -
Lal6g0874 529 SUPERFAMILY E set domains 450 528 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0874 Lal-Chr6 5992854 5998186 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0874 - - gmx:100814629 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0874 6 5992854 5998186 Lal6g0874 6 5992854 5998186 ECH