Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0856 ATGAGTTCTGGTGGATACTCTGTAGAAGTTACTGGTCTCTCTTCCAAAGCCACTGAGAAGGATGTCCATGACTTTTTTGCTTTCTCTGGTATAATTGAGCATGTTGAAATTGTTAGGTCTGGCGATTATGCTTGCACTGCGTATGTGACGTTCAAAGATGCATATTCTCAAGAAACTGCTTGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGGCACTATGAAGCTGAATTTGATTTTTGGAATCACCCTTCATATAATCATGAGGAGGAGACTTCTTCAACTACACCACAAAGCAGCCAATTTGTTTCCTCTGCTGGAGAAGCGGTCACTGTGGCTCAAGAAGTTGTGAAAACAATGCTAGCAAAGGGATATATTCTCAGTAAGGATGCATTAGCTAAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTCTGCCACAGCAACGGCGAAGGTTTCTGAACTGAGTCAGAGAATTGGCCTCACTGATAAGATATCTGCGGGCGTTGAAGCTGTTAGATCTGTGAATCAGAAATATAATGTCTCTGAAACTGCCAAGGCTGCTGCATCTGCAACAGGAAGATCGGTAGCAGCGGCCGCAAATTCTGTGGTCAATAGCAGTTATTTTTCGAAGGGTGCCTTGTGGATGTCAGGCGCTCTAACCCGAGCGGCTCAAGCTGCTTCTGATCTGGGTACTCGAAATGGTAGGCAGTAA 735 0.449 MSSGGYSVEVTGLSSKATEKDVHDFFAFSGIIEHVEIVRSGDYACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGHYEAEFDFWNHPSYNHEEETSSTTPQSSQFVSSAGEAVTVAQEVVKTMLAKGYILSKDALAKAKDFDESHQVSATATAKVSELSQRIGLTDKISAGVEAVRSVNQKYNVSETAKAAASATGRSVAAAANSVVNSSYFSKGALWMSGALTRAAQAASDLGTRNGRQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0856 244 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 243 - -
Lal6g0856 244 SUPERFAMILY RNA-binding domain, RBD 6 78 IPR035979 GO:0003676
Lal6g0856 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 71 IPR000504 GO:0003723
Lal6g0856 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 72 IPR000504 GO:0003723
Lal6g0856 244 CDD RRM_Vip1_like 8 76 IPR034360 -
Lal6g0856 244 SMART rrm1_1 7 77 IPR000504 GO:0003723
Lal6g0856 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 243 - -
Lal6g0856 244 Gene3D - 2 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0856 Lal-Chr6 5798965 5802024 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0856 - - gsj:114378905 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0856 6 5798965 5802024 Lal6g0856 6 5798965 5802024 ECH