Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0608 ATGTCTTTCTCTGCAACCAAGTTTGTTCACCCTCTTCCTCTGAATTCCTCTACCACTTCTCCCAGATCTACTGACAAACCTCTCTCTTTTGATCCATCATTCAAAGCTACTTCCTCTTTTGTTGGATCTACTCATAAACTTCGACTCAATGCTTTCTCTAAGTCTCTTTCTCTACGCCGTTCATCTTCTTCACATGTTGTTGCTGTCTCCGATGTTGTTAAGGAGAAGAAGCTCAAAACTAACTCCAATCTGCTTATTACAAAAGAGGAAGGATTGGATCTCTACGAAGACATGGTATTAGGGAGGTCATTTGAGGACATGTGCGCCCAGATGTACTACAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAACGGTCAAGAAGCTGTGTCAACTGGGTTCATCAGGCTTCTGAAGAAAGAAGATTATATAGTGAGCACCTACAGGGACCATGTCCATGCACTGAGTAAGGGAGTCCCGGCTCGCAGTGTGATGAGTGAACTCTATGGGAAGGCCACAGGAATCTGCCGAGGTCAGGGCGGTTCAATGCATATGTTCTCGAAAGAGCACAATCTGCTTGGTGGCTTTGCCTTCATTGGTGAAGGAATTCCAATTGCCACTGGGACTGCATTTTCATCCAAGTACAGAAGAGAGGTACTGAAAGAGCCAGGTGCTGATAACGTGACAGTGGCGTTTTTTGGAGATGGGACTTGTAATAATGGGCAGTTCTTTGAATGCCTGAACATGGCAGCTTTGTGGAAATTGCCAATTATATTTGTGGTGGAAAACAATTTGTGGGCTATTGGGATGTCACATCTCAGGTCAACTTCTGATCCTCAGATATGGAAGAAAGGACCAGCATTTGGGATGCCAGGGGTTCATGTAGATGGGATGGATGTTTTGAAGGTCAGAGATGTGGCAAAGGAGGCAATTGAAAGAGCCAGAAGAGGAGAGGGACCAACTTTGGTGGAATGTGAGACTTATAGATTTAGAGGACACTCATTGGCTGATCCCGATGAGCTTCGTGACCCTGATGAGAAAGCAAAGTATGCTACCAGGGATCCCATCGCTGCATTGACCAAATACATTCTTGAGAACAAATTAGCCAGTGAACAAGAATTGAAGAGCATAGACAAGAAAATTGACGAGCTCCTAGATGAAGCTGTTGAGTTTGCGGACGCGAGTCCTCATCCAGAACGCAGCCAGCTTTTAGAGAATGTGTTTGCTGATCCTAAAGGTTTTGGAATTGGACCAGATGGCAAGTATAGATGTGAGGATCCAAAATTCACCCAAGGCACTGCTCATGTCTAA 1311 0.4477 MSFSATKFVHPLPLNSSTTSPRSTDKPLSFDPSFKATSSFVGSTHKLRLNAFSKSLSLRRSSSSHVVAVSDVVKEKKLKTNSNLLITKEEGLDLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIRLLKKEDYIVSTYRDHVHALSKGVPARSVMSELYGKATGICRGQGGSMHMFSKEHNLLGGFAFIGEGIPIATGTAFSSKYRREVLKEPGADNVTVAFFGDGTCNNGQFFECLNMAALWKLPIIFVVENNLWAIGMSHLRSTSDPQIWKKGPAFGMPGVHVDGMDVLKVRDVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPDEKAKYATRDPIAALTKYILENKLASEQELKSIDKKIDELLDEAVEFADASPHPERSQLLENVFADPKGFGIGPDGKYRCEDPKFTQGTAHV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0608 436 Coils Coil 367 387 - -
Lal6g0608 436 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 83 411 IPR029061 -
Lal6g0608 436 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 88 409 IPR017597 GO:0004739|GO:0006086|GO:0043231
Lal6g0608 436 Gene3D - 50 418 - -
Lal6g0608 436 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 4 436 - -
Lal6g0608 436 CDD TPP_E1_PDC_ADC_BCADC 94 392 - -
Lal6g0608 436 Pfam Dehydrogenase E1 component 97 399 IPR001017 GO:0016624
Lal6g0608 436 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 4 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0608 Lal-Chr6 3906567 3912170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0608 2 436 Acyl Lipid Metabolism Gene Families AT1G01090 78.161 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0608 K00161 - mnt:21402566 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0608 6 3906567 3912170 Lal6g0608 6 3906567 3912170 ECH