LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g0546	ATGGTGATGAAGATTTTGTGTTGTTCCCTTGCAATCCTTTTAACAGTGGCTTTTGGCACCGTCCAAGGTAGCAATGTCACCTATGATGGAAGATCATTGATCATCGATAATAACCATAGAATCCTCTTCTCTGGTTCAATTCACTATCCTCGTAGCACCCCTCAGATGTGGCCTTCTTTAATTGCTAAAGCTAAGAAAGGAGGAATAGATGTTATACAAACTTATGTATTTTGGAACCTTCACGAACCCATACAAGGCCAGTTTGACTTCAGTGGAAGGCGTGATTTAGTGAGATTCATTAAAGAAATCCAAAAACAAGGTTTACATGTGACCCTCAGAATTGGACCATTCATTGAGAGTGAATGGACCTATGGGGGCCTACCATTATGGTTGAGTCATATTCCGGGTATTGTTTTTAGATCAGATAATGAGCCATTCAAGTTTCACATGCAAGACTTCACTACCAAAATAGTCAACTTGATGAAATTATCTAATCTTTATGCTTCACAAGGAGGACCTATCATACTATCGCAGATTGAGAATGAGTATACCCTGGTTGAAGGGGCGTTTCACGAAAAAGGGCCAACTTATGTTAATTGGGCTGTACAAATGGCAGTGAAAACACAAACTGGTGTGCCTTGGATAATGTGCAAGCAAGATGATGCTCCTGATCCAGCGATCAACACATGCAACGGTCAGAGATGCGGGAAAACATTTAAGGGACCCAACTCGCCTAACAAGCCTTCATTATGGACAGAGAACTGGACAAGTTTCTATCAAGCCTTTGGTGAAGAACCACCCCACAGATCAGCTGAAGACATTGCATATGATGTTGCTTTGTTTGTTGCAAAGAATGGAAGCTATGTCAACTACTACATGTACCATGGAGGAACCAATTTTGATAGAACAGCATCTGCTTTTGTAACAACAGCTTATTATGATGAAGCTGTACTAGATGAATATGGTTTGGTTAGACAACCACACTGGGGCCATCTAAAGAAACTACATGCTGCAATCAAGTCATGTTCAAAGACTTTACTATATGAAACACAAACTACATTCAGCTTGGGTCGAGGGCAACAAGCTTATGTTTTTGGAATGAACTCAACAAAAGATAAATGTGCTGCCTTCCTGGAAAATAGTGATCTTAGTGCAGCCACAATCCAATTTCGAAATGTCACATATAAATTACCTCCAAAATCAATTAGTATTCTACCTGACTGCAAGAAAGTGGTATTCAACACAGCCAACGTAAGGACACAAAATATTAACACCAGAATCAGGAAATCACAGTTAAACTTCAGCTCATCTGAAAAGTGGAAGGTGTATGAAGAAGCCATCCCTAACTATGATGATACTTCATTAAAAGCAAACACATTTTTGAATCAAATCACCACAACAAATGATACATCTGATTATTTATGGTACACTTTAAGCCTTCAAGCAAGCTCTCCAAGTGCTCCATCAGTTCTTAGTGTATACAGCCGAGGACATGTTTTGCATGCATTCGTCAATGGAGTTTTAGTTGGTTCTGCACATGGAAGTAAGAAGATTCCAGAATTCAACATGGATGGCAATATCACTTTGATAAAAGGGACAAACAAAATTTCCTTACTTAGTGCAACAGTTGGAATGCCGGGTGGAGGAGCATATTTAGAGCGTAAAGTTGCTGGTCTGCGTAGGGTGAAAATTAATGACACAAATCTCACTAATCAAACTTGGGGGTACCAGGTTGGGTTGTTGGGAGAAAAATTGCGAATTCATACATATATAGGATCAAATAATGTTCAGTGGAAAAGTCTTGGACGTTACTCTACTAAACCACTCACATGGTATCAGCACTTAATCTGGGTTCTATGGGAAAGGGTGAAGCTTGGATTAATGGCCAAAGCATTGGTCGATACTGGGTCCTTCTTGAAACGTAGGAGGAACCTACTAGTTCTATTTGAAGAAGAAATTGGAAACCCACTTGGGATTACTTTAGACACTGTTCACATCATGGCCAATCATCACTCCACATGA	2022	0.3981	MVMKILCCSLAILLTVAFGTVQGSNVTYDGRSLIIDNNHRILFSGSIHYPRSTPQMWPSLIAKAKKGGIDVIQTYVFWNLHEPIQGQFDFSGRRDLVRFIKEIQKQGLHVTLRIGPFIESEWTYGGLPLWLSHIPGIVFRSDNEPFKFHMQDFTTKIVNLMKLSNLYASQGGPIILSQIENEYTLVEGAFHEKGPTYVNWAVQMAVKTQTGVPWIMCKQDDAPDPAINTCNGQRCGKTFKGPNSPNKPSLWTENWTSFYQAFGEEPPHRSAEDIAYDVALFVAKNGSYVNYYMYHGGTNFDRTASAFVTTAYYDEAVLDEYGLVRQPHWGHLKKLHAAIKSCSKTLLYETQTTFSLGRGQQAYVFGMNSTKDKCAAFLENSDLSAATIQFRNVTYKLPPKSISILPDCKKVVFNTANVRTQNINTRIRKSQLNFSSSEKWKVYEEAIPNYDDTSLKANTFLNQITTTNDTSDYLWYTLSLQASSPSAPSVLSVYSRGHVLHAFVNGVLVGSAHGSKKIPEFNMDGNITLIKGTNKISLLSATVGMPGGGAYLERKVAGLRRVKINDTNLTNQTWGYQVGLLGEKLRIHTYIGSNNVQWKSLGRYSTKPLTWYQHLIWVLWERVKLGLMAKALVDTGSFLKRRRNLLVLFEEEIGNPLGITLDTVHIMANHHST	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g0546	673	Gene3D	Glycosidases	23	343	-	-
	Lal6g0546	673	PRINTS	Glycosyl hydrolase family 35 signature	36	53	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	PRINTS	Glycosyl hydrolase family 35 signature	57	75	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	PRINTS	Glycosyl hydrolase family 35 signature	112	131	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	PRINTS	Glycosyl hydrolase family 35 signature	169	184	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	PRINTS	Glycosyl hydrolase family 35 signature	250	265	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	PRINTS	Glycosyl hydrolase family 35 signature	287	302	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	PRINTS	Glycosyl hydrolase family 35 signature	306	322	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	Pfam	Beta-sandwich domain in beta galactosidase	346	418	IPR041392	-
	Lal6g0546	673	PANTHER	BETA-GALACTOSIDASE RELATED	637	667	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	PANTHER	BETA-GALACTOSIDASE RELATED	8	615	IPR001944	GO:0004553\|GO:0005975
	Lal6g0546	673	Pfam	Glycosyl hydrolases family 35	32	338	IPR031330	-
	Lal6g0546	673	SUPERFAMILY	Galactose-binding domain-like	402	553	IPR008979	-
	Lal6g0546	673	SUPERFAMILY	(Trans)glycosidases	23	342	IPR017853	-
	Lal6g0546	673	PANTHER	BETA-GALACTOSIDASE	8	615	-	-
	Lal6g0546	673	PANTHER	BETA-GALACTOSIDASE	637	667	-	-
	Lal6g0546	673	ProSitePatterns	Glycosyl hydrolases family 35 putative active site.	171	183	IPR019801	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g0546	Lal-Chr6	3515827	3525668	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal6g0546	6	668	Glycoside Hydrolase	AT5G63800	55.334	0.0	776

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal6g0546	-		-	gmx:100789220	929.087

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0546	6	3515827	3525668	Lal6g0546	6	3515827	3525668	ECH