Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0507 ATGGCTCAAATGGGTTCATTTCTATCTGCTGAAATGGAGACACTGAATCATGTTCTTCGACTAATCGAGGCGTTTAGAGCTTTCGATGCAGACAACGATGCGCGCATTACAGAGGCGGAGCTAGGAGGAATAATGGTGTCACTAGGGTACAAAGTTAGTGAACAAGAAGTGAGGACAATGATGCAAAATGGAGACAAGAACAAGGATGGGTTACTTAGCATAAGTGAGTTCTTGGAGATGAACACAAAGGACTTAGAAAGTGGGAATCTTTCTAATGTTCTTAGGACAACATTTGAAGCATTGGATGAAGATGGTAATGAAATTTTGACTGGTCAAGAGTTGCATGATGTTATGGGAAATTTAGGTTTAGGATTGTCTCTAGAGAGTTGTCAAAATATTGTTACTTCTCTAGACATGGATGGAGATGGAGCTGTGAGTTTAGATGAATTTCGTCTCATAGTTGATTCCCTCCTCTAA 477 0.4004 MAQMGSFLSAEMETLNHVLRLIEAFRAFDADNDARITEAELGGIMVSLGYKVSEQEVRTMMQNGDKNKDGLLSISEFLEMNTKDLESGNLSNVLRTTFEALDEDGNEILTGQELHDVMGNLGLGLSLESCQNIVTSLDMDGDGAVSLDEFRLIVDSLL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0507 158 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Lal6g0507 158 Gene3D - 86 157 - -
Lal6g0507 158 ProSiteProfiles EF-hand calcium-binding domain profile. 52 87 IPR002048 GO:0005509
Lal6g0507 158 ProSitePatterns EF-hand calcium-binding domain. 65 77 IPR018247 -
Lal6g0507 158 ProSiteProfiles EF-hand calcium-binding domain profile. 125 158 IPR002048 GO:0005509
Lal6g0507 158 Pfam EF-hand domain pair 21 80 IPR002048 GO:0005509
Lal6g0507 158 CDD EFh 20 80 IPR002048 GO:0005509
Lal6g0507 158 SMART efh_1 93 121 IPR002048 GO:0005509
Lal6g0507 158 SMART efh_1 56 84 IPR002048 GO:0005509
Lal6g0507 158 SMART efh_1 129 157 IPR002048 GO:0005509
Lal6g0507 158 SMART efh_1 20 48 IPR002048 GO:0005509
Lal6g0507 158 Gene3D - 3 85 - -
Lal6g0507 158 SUPERFAMILY EF-hand 15 153 IPR011992 -
Lal6g0507 158 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 22 154 - -
Lal6g0507 158 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Lal6g0507 158 ProSiteProfiles EF-hand calcium-binding domain profile. 16 51 IPR002048 GO:0005509
Lal6g0507 158 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 22 154 - -
Lal6g0507 158 Pfam EF-hand domain pair 108 150 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0507 Lal-Chr6 3252253 3252729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0507 19 154 EF-hand Containing Proteins AT1G24620 35.766 9.47e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0507 - K02183 gmx:100782291 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0507 6 3252253 3252729 Lal6g0507 6 3252253 3252729 ECH