Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0437 ATGGGTTTCCATCTTCTTGTTACAATCTTAACCAAATCACTCACCTTTCTTACATGGCCCCCATTAAGTTTTATTTGTCCCCTGTACGCTTCTGTTCGTGCAATGAAGAGTGATTCTCGCTGCAGCAATCAGCAATGCCTTGCTTTTTGGGTTTTGTTTTCATTCTCTATGATTATTGAACGGGAATTTGCAGTGTTATTTAACAGGCTACCATGGTGGCCTAATGTGAAAAGCATGGCAACTATCTTACTGTTGATACCTTACTTTGGCGGTTCTCTATACATCTATAAGTACTTGATTAAGTGCTACTGTACTTGGAACATATGTACAGAGAACTTTAACATTGTTAACCAAAAGAGCGCACATGTTGTATTCGATGAGGACAGCAATTTCGTTCATGTCACTGAACAGACAATTATTCCAAGTCAAATACAAGAGAAGAAACTTGCAGTAAATCAGTTATTTTGTGTGTCTAATGTTATGTTAATGGTAGTTACTATTAATGATGCAATGGGGAGATGTGAAGTTCCTATCAAATATACGAGGCCAACAGTTACAAAGCAAGTTCAGAAAGAATGGAGTTGTGCTTTATGTCAGATTAGTACTACCAGCGAAAATTGCTTATTGGCACATCTTCAAGGTAAGAAACACAAGACTAAGGAAAGTGAAGTTAGAAATGTGCTACATTTAATGGATAGCAAATACTTACCATCCTCTAAAGGAATCATTCTACTAAGGAATCTCAACCAAATTGTAAAAATTCTGAATCCAGTTTCTAGATCCATAAGATTGTGTGAATGGATAAAGCCAAACTTTGGATGGATAAAATTGAATACCGATGGTTCTATACACGATGAAATTGCTGGTTTTGGTGGTCTGCTTCGGGATCACATGGGTGAACCAATATGTGCTTATGTCTCCAAAGCTCCTCAAGGAGATGTTTTCTTGGTTGAACTTTGGGCCATATGGAGAGGCCTTGTTCTTTCCTTAAGTCTTGGGATTACTGCTTTATGGGTAGAGTCGGACTCCATGAGTGTTGTGAAGACAATCAATAAAGAACAACCTTCTTGCTCGAAAGCTTATGGTTGCTTGGAACAAATCTGGAAACTCCTGACGAAGTTTGATAAATATCACATTTCTCACTCATGGCGCGAAACTAATAGAGCAGCAGATCATCTTGCAAAGATGGTTCTATGGGGAAATGATGTTATTTTGTGGCCCATTGATTTTCCACATAGTCTTCGCAATATCATTGATGATGATGCAAGAGGAAAGAAATATATTAGAAGGTGA 1293 0.379 MGFHLLVTILTKSLTFLTWPPLSFICPLYASVRAMKSDSRCSNQQCLAFWVLFSFSMIIEREFAVLFNRLPWWPNVKSMATILLLIPYFGGSLYIYKYLIKCYCTWNICTENFNIVNQKSAHVVFDEDSNFVHVTEQTIIPSQIQEKKLAVNQLFCVSNVMLMVVTINDAMGRCEVPIKYTRPTVTKQVQKEWSCALCQISTTSENCLLAHLQGKKHKTKESEVRNVLHLMDSKYLPSSKGIILLRNLNQIVKILNPVSRSIRLCEWIKPNFGWIKLNTDGSIHDEIAGFGGLLRDHMGEPICAYVSKAPQGDVFLVELWAIWRGLVLSLSLGITALWVESDSMSVVKTINKEQPSCSKAYGCLEQIWKLLTKFDKYHISHSWRETNRAADHLAKMVLWGNDVILWPIDFPHSLRNIIDDDARGKKYIRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0437 430 CDD RNase_H_like 277 395 IPR044730 -
Lal6g0437 430 Pfam Zinc-finger of C2H2 type 193 217 - -
Lal6g0437 430 Gene3D Classic Zinc Finger 178 223 - -
Lal6g0437 430 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 8 430 - -
Lal6g0437 430 SUPERFAMILY Ribonuclease H-like 273 404 IPR012337 -
Lal6g0437 430 PANTHER HVA22-LIKE PROTEINS 8 430 IPR004345 -
Lal6g0437 430 SUPERFAMILY beta-beta-alpha zinc fingers 183 222 IPR036236 -
Lal6g0437 430 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Lal6g0437 430 SMART ZnF_U1_5 190 224 IPR003604 GO:0003676|GO:0008270
Lal6g0437 430 Pfam Reverse transcriptase-like 278 396 IPR002156 GO:0003676|GO:0004523
Lal6g0437 430 Gene3D - 273 398 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0437 Lal-Chr6 2741714 2745104 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0437 - - lang:109359207 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0437 6 2741714 2745104 Lal6g0437 6 2741714 2745104 ECH