Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0436 ATGGCCGTCGCTCTTCGCCGTCTTTCCTCCTCCATTCACAAACCACCGCATTTCCCTTCCGCCGCTTCTCTTTACTCCACGTGGATAAAACAACTGAACGAGCCTTTGGAGGTAATAGATCCTGAGATAACAGATATAATCGAACTCGAGAAAGCTCGTCAATGGAAGGGTTTGGAACTTATACCTTCGGAGAATTTCACGTCACTCTCAGTTATGCAAGCGGTTGGATCTGTGATGACAAATAAATATAGCGAAGGTTATCCTGGTGCTAGATACTATGGAGGAAATGAGTATATTGATATGGCTGAGACCTTGTGTCAGAAGCGTGCATTAGAAGCTTTTGGTTTGGATCCAGCAAAATGGGGAGTTAATGTGCAGTCTTTATCTGGATCTCCTTCTAACTTCCAAGTTTACACTGCCTTATTGAAACCTCATGAGAGAATAATGGCACTTGATCTTCCTCATGGGGGGCATCTATCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATTTTCTTTGAAACAATGCCATACCGATTGAACGAGAGCACTGGTTATATTGACTATGACCAGCTGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCCAGTGCTTATGCTCGCCTTTATGATTATGCTCGTATTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATAGCACATATCAGTGGATTGGTTGCTGCTGGTGTCATTCCTTCTCCCTTTGATTATGCAGATGTTGTAACAACAACAACCCATAAGTCACTTCGTGGACCACGCGGAGCTATGATCTTCTTCAGGAAGGGTGTAAAAGAGATAAACAAGCAAGGGCAGGAATTTTCATTGTTTTGTAATGTTAAGGTGTTGTACGATTACCAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTACAAGGTGGTCCACACAATCATACTATTACAGGCTTGGCAGTTGCATTGAAGCAGGCTATGACACCAGAATTTAAGCATTACCAACAGCAAGTTCTGAGTAACAGCTCAACTTTTGCACAGAATGTTATAGCTGACTCTGCTGTGTTGATTGAACTCCAGAGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGTACTGATAACCACTTGGTGTTGGTGAACTTAAGAAACAAGGGCATTGATGGCTCAAGGGTTGAGAAGGTGTTAGAATCAGTTCATATAGCAGCCAACAAAAATACGGTTCCTGGGGATGTATCTGCTATGGTTCCTGGAGGCATTCGAATGGGTACAGTTTCTCTTCTTGCAAGTCCTCCTTATTATAGAACCCCTGCTCTCACATCCAGAGGCTTTGCTGAGGAAGATTTTAAAAAAGTAGCTGAATTCTTTGATGAGGCAGTCAAGTTAGCCTTACAGATTAAGGCTAATGCCCAAGGTACAAAGTTGAAGGATTTTGTGGCAGCTATGCAATCAGATGCACACATTCAATCCGAAATTGCTAAACTGCGCCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTCGAGGTAGAGACAATGAAGTATGGTAAGTGA 1596 0.4254 MAVALRRLSSSIHKPPHFPSAASLYSTWIKQLNEPLEVIDPEITDIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFGLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADIAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEFSLFCNVKVLYDYQDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKHYQQQVLSNSSTFAQNVIADSAVLIELQSLLEKGYELVSGGTDNHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTVSLLASPPYYRTPALTSRGFAEEDFKKVAEFFDEAVKLALQIKANAQGTKLKDFVAAMQSDAHIQSEIAKLRHEVEDYAKQFPTIGFEVETMKYGK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0436 531 Gene3D - 65 346 IPR015421 GO:0003824
Lal6g0436 531 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 26 530 - -
Lal6g0436 531 PIRSF SHMT 20 526 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal6g0436 531 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 26 530 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal6g0436 531 Pfam Serine hydroxymethyltransferase 37 466 IPR039429 -
Lal6g0436 531 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 259 275 IPR019798 GO:0030170
Lal6g0436 531 SUPERFAMILY PLP-dependent transferases 26 522 IPR015424 -
Lal6g0436 531 Gene3D Aspartate Aminotransferase, domain 1 40 518 IPR015422 GO:0003824
Lal6g0436 531 Hamap Serine hydroxymethyltransferase [glyA]. 35 521 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lal6g0436 531 CDD SHMT 40 493 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0436 Lal-Chr6 2735332 2740894 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0436 K00600 - gmx:100816213 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0436 6 2735332 2740894 Lal6g0436 6 2735332 2740894 ECH