Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0034 ATGGCGCAGCTGCTGTACCTGTCTCTTCTGCCCTTTTCACCTCTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCTTCCAACCTAAGCTCAAAGCCATTGAAGCTTACCCACAAAACTCGCAGCTCCAATTCCTCCACTCCCAAAGGTACTCCCAATCGTTTCTTCAAAACCCACAAGTTCAACTTAGAGGTTTCTCCTCATAGAGCTGTGTCAGCAGTGAGATTGATGAGAATAGAGCTAGGTGGTGCATTTGCTGACCTTCTCAATGAGAAAGGCAAAGGTTCTGGTGAGAACGAGATGGGATATGTCCAAAGAACTCTTGGTTTTCGCACACGTGAATTAACTCATCACGATCTTAGATTGGTTACTGACATTGTTGGGGGTACTATTCGTTGGAGAAGATATCTTGATCATCTCATCAGTTCACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTTTACGAATTGGCTTCTACGAGATCGTCAAATTAGATATGCCACCTTATGCTGTTGTAGATGAGAATGTGAGGCTTGCGAAAGTCGCTCTCAGACCTGGTGCTGGCAACATGGTCAATGGAATCCTCAGAAAGCTAGTTGTGCTTAAGGAAAATGAAACTCTTCCCATGCCTAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACCCTGTACTCACATCCAGTTGTGAGTGTAGCAAACTGTGCTAGAGGCTTTTCAAGAGATGACCTTGTGTCAGAACTGAATACATTGAAGGTCCCACACAAGCTTTCATCCCATTTGAATGAATTTGTTCGTGTGAAAACCGGGTTGCAGATTGTCATTCAAGCTGGTCTTCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGATAGTTTCTGTTGTTGATCCTCAACCTGGTGAAACTATAATTGATTGCTGTGCTGCTCCTGGTGGAAAAACCCTGTACATGGCCTCTCGTCTAAGTGGACAAGGTATGGTGTTTGCAATTGATGTAAACCGTGGTAGGTTGAGAATTCTCAAAGAGACAGCAAAGTTACAACAAGTAGATGGTGTTGTTACCACTATCAATGCTGATCTTCGTACATTGACTGATATTGAACCACTTAAGAGTAACAAAGTTTTGTTGGACGCTCCATGCTCTGGACTCGGTGTTCTTTCGAAGAGAGCTGATTTGCGTTGGAACAGGAAGCTGGAGGATATGGAAGAACTGAAAATATTACAGGATGAGCTCCTAGATGCAGCATCCAAATTAGTAAAACCGGGTGGAGTGTTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGATGAGAGGGTAGCTGCATTTCTTGTAAGACATCCGGATTTTCACATTGATCCTGTTGACAAATATGTTTCAGCTGATTTTGTAACTCAAAATGGTTTCTATTTTTCCAACCCAGTAAAACATTCATTGGATGGATCATTTGCAGCTCGTTTGGTTCGAGCTTTATAA 1575 0.4235 MAQLLYLSLLPFSPLSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNLSSKPLKLTHKTRSSNSSTPKGTPNRFFKTHKFNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELTHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNMVNGILRKLVVLKENETLPMPKVEGDDRAQARALATLYSHPVVSVANCARGFSRDDLVSELNTLKVPHKLSSHLNEFVRVKTGLQIVIQAGLLKKGLCSVQDESAGLIVSVVDPQPGETIIDCCAAPGGKTLYMASRLSGQGMVFAIDVNRGRLRILKETAKLQQVDGVVTTINADLRTLTDIEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKILQDELLDAASKLVKPGGVLVYSTCSIDPEENDERVAAFLVRHPDFHIDPVDKYVSADFVTQNGFYFSNPVKHSLDGSFAARLVRAL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0034 524 Pfam NusB family 120 225 IPR006027 GO:0003723|GO:0006355
Lal6g0034 524 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 261 523 - -
Lal6g0034 524 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 37 261 - -
Lal6g0034 524 CDD AdoMet_MTases 334 460 - -
Lal6g0034 524 MobiDBLite consensus disorder prediction 12 72 - -
Lal6g0034 524 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 261 523 IPR023267 GO:0001510
Lal6g0034 524 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 37 261 IPR023267 GO:0001510
Lal6g0034 524 Gene3D Vaccinia Virus protein VP39 236 522 IPR029063 -
Lal6g0034 524 SUPERFAMILY NusB-like 124 256 IPR035926 -
Lal6g0034 524 Gene3D - 92 235 IPR035926 -
Lal6g0034 524 PRINTS RNA (C5-cytosine) methyltransferase signature 307 321 IPR023267 GO:0001510
Lal6g0034 524 PRINTS RNA (C5-cytosine) methyltransferase signature 336 346 IPR023267 GO:0001510
Lal6g0034 524 PRINTS RNA (C5-cytosine) methyltransferase signature 404 416 IPR023267 GO:0001510
Lal6g0034 524 PRINTS RNA (C5-cytosine) methyltransferase signature 454 470 IPR023267 GO:0001510
Lal6g0034 524 PRINTS RNA (C5-cytosine) methyltransferase signature 505 522 IPR023267 GO:0001510
Lal6g0034 524 PRINTS Viridiplantae FMU-related RCMT signature 93 116 IPR023268 -
Lal6g0034 524 PRINTS Viridiplantae FMU-related RCMT signature 117 133 IPR023268 -
Lal6g0034 524 PRINTS Viridiplantae FMU-related RCMT signature 232 245 IPR023268 -
Lal6g0034 524 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 248 523 IPR001678 GO:0008168
Lal6g0034 524 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 249 522 IPR029063 -
Lal6g0034 524 MobiDBLite consensus disorder prediction 12 74 - -
Lal6g0034 524 Pfam 16S rRNA methyltransferase RsmB/F 326 520 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0034 Lal-Chr6 239547 248706 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0034 K03500 - gmx:100779327 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0034 6 239547 248706 Lal6g0034 6 239547 248706 ECH