Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0028 ATGATGGAAAATGGAAGAGAGGATGAGATTGAAGACATGTCAATGTCACCACCATCTGTGGGTTCCATGCAGATAGCAGGGAGCAATGGCTTTGGTCATAGCATGGAGTTCATGTCTCAGGCATACCTTCCTAATAGGTACTCAGAGATTGGCATCAAAGTTGAGGATTCCAATTTCAACCAACAACCTCCCCTCCCTATATATCTTAAGTTTGAAGATGTAGAGTATAAGGTGAGAAATAGTCAAGTGGCTTCAAATAATCCTGTGAAGACAATGGTGTCAAAGGTAGCCACTCAACATGTGAAAGAAGATAGATACAAGAAAATTTTAAAGGGTATCACAGGAAGCATTGGCCCTGGTGAAATTCTTGCTCTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTAATAGGAGGAAGATTAGTTGACAATGTAAAGGGAAATATAACTTACAATGATGTTAGATATAATCCCGCTGTCAAGCAGAGGATTGGATTTGTGATGCAAGAGGATGTGCTTTTCCCACAGCTTACAGTAGAAGAGACATTAATATTCTCTGCATTCTTAAGGTTGCCAACCAACATGAGCAAGCAACAAAAATATGCAAGAGTAGAGACCACTATCAAGGAATTAGGCCTTGAAAGATGTCGCCACACAAAATTAGGTGGAGGATTTCTCAACGGCATATCAGGAGGAGAGAGGAAAAGAACCAGCATAGGCTATGAAATTCTTGTTGATCCTTCATTGCTGCTACTTGATGAACCAACTTCGGGCCTTGATTCCACCTCAGCAAATAGACTACTTCTCACTCTTCAAGGACTCGCCAAGACTGGAAGGACCATAATCACAACAATTCACCAGCCATCAAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTAATATCAGGAGGCTATCCTATTTTCTATGGGAAGGCTAGAGAGTCAATTGAGTACTTTTCATCCTTGAGTTTCATCCCGGAAATACCAATGAATCCTGCAGAGTTCATGCTTGACTTGGCAACTGGGCAAGTGAATGACATAAGTGTTCCACAAGATATGCTGAAAGATCAAGAATCTGCCGACACTTCAAGAGCTGTTATTAACTATCTGCAACTGAAGTATAAAGATACACTGGAGCCAAAAGAAAAAGAAGAGAACCATGGAGCAACAAACACACCGGAAAATCTTCAACTAGCCATTCAGGTTAAAAAGGAATGGACATTGAGTTGGCTAGACCAATTCATTATTCTTTATAAGAGAACATTCAGAGCAAGATGCAAGGACTACTTTGATAAATTAAGACTAGTCCAAGCATTTGGAATTGCACTTTTGTTGGGGATGCTTTGGTGGAAATCTTCAACCAATACAGAAGCTCAACTCAGGGATCAGGTTGGTTTAATGTTCTATATCTGCATATATTGGACATCTTCCTGTATTTTCGGAGCAGTCTATGTGTTTCCATTTGAAAAGGTTTACTTGGTGAAAGAAAGGAAAGCAGACATGTATGGATTAAGTGTATACTATGCATGTAGCACCTTATGTGACATGGTGGCACATGTTTTCTATCCTACTTTTTTCATGTGCATCCTATACTTCATGGCCGGCTTTAAGAGAACCGTGGCTTGCTTCTTCCTTACATTGTTCGCCGTGCAATTGATAGCTGTTACTAGTCAAGGGGCAGGAGAACTATTTGGAGCTGCAGTTATGAGTATTCAAAGAGCAGGGATGGTTGCTTCTTTGATACTAATGTTATTCCTTCTTACAGGTGGTTACTATGTCCAGCACATACCAAAGTTCATGCAGTGGTTAAAGTATTTGTCATTCTTGTACTATGGATTTAGACTTCTTCTAAAAGTGCAGTATTCAGGAGATGAACTATATGAGTGTGAAAGCAAGGGAGGGTGTAGGCCATTGCAGAGTTCACCTTCATTTGACACTGTAAACTTGAAAGGAGGGTTAACAGAACAAGAGAAGAAGATAGAGTGGTCAGTGCTCAAAATAGGCCTCCACCGTGCACCTCACCGCCGTCATATGGCTATGAGAATATCTAGAGCAAGGTGGTTTACCTTCTTAAGAAGAGTATTCCATTACCAAAATGGATCCAGGTCACAGATTGGTAGCAATCCTTTCAATTCTAACACATGGATGATGTTGGAGTTCATTGCTTTGATTGTTCAGATAAGTATTACAACATCCACTTTGCTCATTTCAAAGAAGGAGAGACCTGTTTGGCCTATGAGGATATGGACAGGTGGTTATGATATTGGCTGTGTTCTTAATCTGTTGTTACTCTATGGGCGCTACCATCAAATTTATCTGAGTCAAGGAGATGTTGTGACCCTTTATGATTTGGAACAGCAGAGAAATAATGAAGAAACCAGGCATCAAGTGTCAGATTCTCTGTTTTCTGATATTAAGATCTTGGCATTTGGGATTGATCAGCTGAATTCAGAAATGGTTAAAAGGTTCGTTTTCCCTGTACCAACTTATGATGACTGCATAGAGGGATTTTTGCATCTATTTGCTCCCATATTGAGATGTTGTGACCTTGATTTAAATAAGCAGCCAACAGGCCTTGAAGATCCTGAACTTCTTGCAAGGGAAACAGTGTTCAGTGTAAGTGAAATTGAAGCACTTTACGAGCTCTTTAAAAAGATCAGCAGTGCTGTCATTGATGATGGGTTGATTAACAAGGAAGAGTTTCAATTGGCATTATTCAAGACAAATAAAAAAGAGAGCTTGTTTGCCGATCGGGTATTTGATTTGTTTGACACAAAGCATAATGGGATACTTGGTTTTGAAGAGTTTGCTCGTGCTCTCTCTGTCTTCCATCCAAATGCTCCTATTGATGATAAGATTGAATTTTCCTTTCAATTGTATGATCTCAAGCAGCAGGGTTTTATTGAAAGGCAAGAGGTGAAGCAAATGGTAGTTGCTACACTCGCTGAATCTGGCATGAACCTATCAAATGATGTTATAGAGAGTATAATTGACAAGACTTTCGAGGAAGCAGATACGAAGCATGATGGCAGGATTGACAAGGAGGAGTGGAGAAGCCTTGTTTTGCGCCACCCTTCACTTTTGAAGAACATGACCCTGCAATATCTCAAGGACATCACCACAACATTCCCAAGCTTTGTATTCCATTCGCAAGTAGATGATACCTGA 3180 0.4028 MMENGREDEIEDMSMSPPSVGSMQIAGSNGFGHSMEFMSQAYLPNRYSEIGIKVEDSNFNQQPPLPIYLKFEDVEYKVRNSQVASNNPVKTMVSKVATQHVKEDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLVDNVKGNITYNDVRYNPAVKQRIGFVMQEDVLFPQLTVEETLIFSAFLRLPTNMSKQQKYARVETTIKELGLERCRHTKLGGGFLNGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLLTLQGLAKTGRTIITTIHQPSSRIFHMFDKLLLISGGYPIFYGKARESIEYFSSLSFIPEIPMNPAEFMLDLATGQVNDISVPQDMLKDQESADTSRAVINYLQLKYKDTLEPKEKEENHGATNTPENLQLAIQVKKEWTLSWLDQFIILYKRTFRARCKDYFDKLRLVQAFGIALLLGMLWWKSSTNTEAQLRDQVGLMFYICIYWTSSCIFGAVYVFPFEKVYLVKERKADMYGLSVYYACSTLCDMVAHVFYPTFFMCILYFMAGFKRTVACFFLTLFAVQLIAVTSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHIPKFMQWLKYLSFLYYGFRLLLKVQYSGDELYECESKGGCRPLQSSPSFDTVNLKGGLTEQEKKIEWSVLKIGLHRAPHRRHMAMRISRARWFTFLRRVFHYQNGSRSQIGSNPFNSNTWMMLEFIALIVQISITTSTLLISKKERPVWPMRIWTGGYDIGCVLNLLLLYGRYHQIYLSQGDVVTLYDLEQQRNNEETRHQVSDSLFSDIKILAFGIDQLNSEMVKRFVFPVPTYDDCIEGFLHLFAPILRCCDLDLNKQPTGLEDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSNDVIESIIDKTFEEADTKHDGRIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0028 1059 Gene3D - 865 1059 - -
Lal6g0028 1059 Pfam EF-hand domain pair 897 942 IPR002048 GO:0005509
Lal6g0028 1059 Gene3D - 93 326 IPR027417 -
Lal6g0028 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 324 IPR027417 -
Lal6g0028 1059 ProSiteProfiles EF-hand calcium-binding domain profile. 915 950 IPR002048 GO:0005509
Lal6g0028 1059 SMART efh_1 919 947 IPR002048 GO:0005509
Lal6g0028 1059 SMART efh_1 956 984 IPR002048 GO:0005509
Lal6g0028 1059 SMART efh_1 1000 1028 IPR002048 GO:0005509
Lal6g0028 1059 CDD ABCG_EPDR 66 314 - -
Lal6g0028 1059 Pfam ABC-2 type transporter 417 625 IPR013525 GO:0016020|GO:0140359
Lal6g0028 1059 SMART AAA_5 119 310 IPR003593 -
Lal6g0028 1059 Pfam ABC-2 type transporter 289 350 IPR043926 GO:0140359
Lal6g0028 1059 Pfam ABC transporter 110 260 IPR003439 GO:0005524
Lal6g0028 1059 SUPERFAMILY EF-hand 866 1051 IPR011992 -
Lal6g0028 1059 ProSiteProfiles EF-hand calcium-binding domain profile. 996 1031 IPR002048 GO:0005509
Lal6g0028 1059 Pfam EF-hand domain pair 955 1021 IPR002048 GO:0005509
Lal6g0028 1059 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 660 - -
Lal6g0028 1059 ProSiteProfiles EF-hand calcium-binding domain profile. 952 987 IPR002048 GO:0005509
Lal6g0028 1059 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 332 IPR003439 GO:0005524
Lal6g0028 1059 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 5 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0028 Lal-Chr6 205654 216719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0028 837 1059 EF-hand Containing Proteins AT5G55990 90.135 6.57e-137 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0028 K05681 - gmx:100783094 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0028 6 205654 216719 Lal6g0028 6 205654 216719 ECH