Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1187 ATGGATTCTTCTAGCAAAACAAAAAACAGCACTCCTCAGATGACCAACATTGGTGATTCTATCGCAAATATGGATGAAATTCATATGGATAATCCTACCAGAGATTTCCTTCACATGTATCTATCCCAACAACATACTCCTTCTTCTTCTTCTTCTCGCCCTCCACCGCATCCCAATTTTCAATCTCAACGCCCTCAACACCTTCGACGCCCTCAACAGTTTCAACGGCCTCAACACCTTCAACGGCCTCAACAGTTTCAACGCCCTCAACAGCTTCAAAGGCCTCAACAATTTCAACGCCCTCAACAGCTTCAAAGGCCTCAACAATTTCAACGCCCTCAAAGGCTGCCGAGATTTCAAGCTCAACGCTCTCAACAGCTTCAACGCCATCAACAGTTTCGACGGCCTCAACGGCTGCCGAGATTTCAAGCTCAACGCCCTCGACCGCTGCCAAAAGCTCAGGCTGAAGGACCTCTACCGCAGCAGAAAACTCAGGCTGAAGGCCCTCTACCGCAGCAGAAAGCTCAGGCTGAAGGCCCTCCACCGCAGCAGCCGAAAGCTGAAGCTCAAAACCCTCCATTGCAGCAGCTGAGAGCTGAAGCTCAGAGCCCTCTGCCGCAGCCAAAGGCTCAAGCTCCAGCTCCAGGCCCTTTGCTTCAGCCGGAAGCTGAAACTCAGAGCCCTCTGCCGCAGCCGAAGGCTCAAGCTCCAGGCCCTTTGCTTCAGCCGGAAGCTGAAACTCAGAGCCCTCTGCCGCAGCCGATGGCTCAAGCTCCAGCTCCAGGCCCTTTGCTTCAGCAGGAAGCTGAAACTCAGTGCCCTCTGCCGCAGCCGAAGGCTCAAGCTCCAGGCCCTTTGCTTCAGCCGGAAGCTGAAACTCAGAGCCTTCTGCCGCAGCCGAAGGCTCAAGCTCCAGCTCCAGGCCCTTTGCTTCAGCAGGAAGCTGAAACTCAGTGCCCTCTGCCGCAGCCGAAGGCTCAAGCTCCAGGCCCTTTGCTTCAGCCGGAAGCTGAAGCTCAGAACCCTCTGCCGCAGCCGAAGGCTCAAGCTCCAGCTCTAGGCCCTTTGTTTCAGCTGGAAGCTGAAGTTGAGAGCCCTCTGCTGTTGCCGAAAGCTGAAGCTCAGAACAGTCTGCCGCAGCCGAAGGCTCAAGCTCCAGCTCCAGCTCCAGGCCCTCTTACGCAACCAAAAGCTCAAGCTCAAAGCCCTCATACTTCTGATACTAAGGTTCAGCATTCTCAGTCATCAGCTGAAACTGTTGCTGCTATTACCACTGCTCCTAATCTCGTATCTAGTAGATTGTTCTTACAAGATATACCAGAGTCCAAGTTGTATAAAAATCAATTGCAAGAGTTCACCCAAAAGTCGAGAATTGAGCTTCCAACGTACCAAACAGTCAATGAGGGTACTCGGCATGTTCCCATGTTTAGGTCGACCCTATGGGTGAGCGGAAAATGTTACACCAACCAAGTTACCTTCGTTAACCGAAAAGCTGCTGAACAAGATGCAGCTAAACTAGCTTTGAAGAGTCTACTTGGAATGATAAAAGATGAAGCTCCACCTGCAGTAATTGAAGAAAAAGCTCCACCTGCAGTAATTGAAGAAAAAGCTCCACCTGTAGCAATTAAAGATGAAGCAAGCCCTACTATTTTGGAGAAAATTTGGCTTTCCAAGTCTATCTTGAATGAATATGCTTTTAAGTTGAATGTAGCATTGCCTACTTACAGCACTGTTGAGACTATTGGGGCCAGTCCTGTTTTTAAATCTACTTTGGTTTTCAACTGTACAAAGTACACTGGTGGTGCTTCTAGACACAAAAGATGGGCTGAGCAGCTAGCAGCTCATCAAGCTATTCTTTCAATTCTATCAGCTGATCCTGGCTCAGAATCACTTTCTGAGATCGTAAAGTTAAACACTGGAATTAGTGCTGCAGTAGCAAAAAAAATTGATTCTACTGATCTATCAGCCACAGTAGAAAATACAGGGCATGCCTGTCATTCACTGGACCTTAACAAGAGAGTTGCAGGTTTAGAAAAGCCTATCGGTGAAGCCTCAACTTTAAGAAAAAGACGAAGGGACAAAAGGAGGGCTAATAAAAAGGCGCGGTTGGAATCACTTTCTGAGATCGTAAAGTTAAACACTGGAATTAGTGCTGCAGTAGCAAAAAAAATTGATTCTACTGATCTATCAGCCACAGTAGAAAATACAGGGCATGCCTGTTATTCACTGGACCTTAACAAGAGAGTTGCAGGTTTAGAAAAGCCTATCGGTGAAGCCTCGACTTTAAGAAAAAGACGAAGGGACAAAAGGAGGGCTAATAAAAAGGCACGGTTGGAAACTCCGTTATCAGTTGCTGCCACATTTCCTATGGATGAAATGCCTCCTTGTTTAATGGGCAGTGATAGTGTGAAGATGTGTGATCAGAGTTAA 2430 0.4798 MDSSSKTKNSTPQMTNIGDSIANMDEIHMDNPTRDFLHMYLSQQHTPSSSSSRPPPHPNFQSQRPQHLRRPQQFQRPQHLQRPQQFQRPQQLQRPQQFQRPQQLQRPQQFQRPQRLPRFQAQRSQQLQRHQQFRRPQRLPRFQAQRPRPLPKAQAEGPLPQQKTQAEGPLPQQKAQAEGPPPQQPKAEAQNPPLQQLRAEAQSPLPQPKAQAPAPGPLLQPEAETQSPLPQPKAQAPGPLLQPEAETQSPLPQPMAQAPAPGPLLQQEAETQCPLPQPKAQAPGPLLQPEAETQSLLPQPKAQAPAPGPLLQQEAETQCPLPQPKAQAPGPLLQPEAEAQNPLPQPKAQAPALGPLFQLEAEVESPLLLPKAEAQNSLPQPKAQAPAPAPGPLTQPKAQAQSPHTSDTKVQHSQSSAETVAAITTAPNLVSSRLFLQDIPESKLYKNQLQEFTQKSRIELPTYQTVNEGTRHVPMFRSTLWVSGKCYTNQVTFVNRKAAEQDAAKLALKSLLGMIKDEAPPAVIEEKAPPAVIEEKAPPVAIKDEASPTILEKIWLSKSILNEYAFKLNVALPTYSTVETIGASPVFKSTLVFNCTKYTGGASRHKRWAEQLAAHQAILSILSADPGSESLSEIVKLNTGISAAVAKKIDSTDLSATVENTGHACHSLDLNKRVAGLEKPIGEASTLRKRRRDKRRANKKARLESLSEIVKLNTGISAAVAKKIDSTDLSATVENTGHACYSLDLNKRVAGLEKPIGEASTLRKRRRDKRRANKKARLETPLSVAATFPMDEMPPCLMGSDSVKMCDQS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1187 809 MobiDBLite consensus disorder prediction 376 418 - -
Lal5g1187 809 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g1187 809 MobiDBLite consensus disorder prediction 1 357 - -
Lal5g1187 809 Pfam Double-stranded RNA binding motif 557 618 IPR014720 -
Lal5g1187 809 Pfam Double-stranded RNA binding motif 445 511 IPR014720 -
Lal5g1187 809 SMART DRBM_3 557 622 IPR014720 -
Lal5g1187 809 SMART DRBM_3 445 512 IPR014720 -
Lal5g1187 809 MobiDBLite consensus disorder prediction 395 418 - -
Lal5g1187 809 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 444 513 IPR014720 -
Lal5g1187 809 SUPERFAMILY dsRNA-binding domain-like 439 511 - -
Lal5g1187 809 SUPERFAMILY dsRNA-binding domain-like 557 621 - -
Lal5g1187 809 MobiDBLite consensus disorder prediction 62 133 - -
Lal5g1187 809 Gene3D - 410 515 - -
Lal5g1187 809 Gene3D - 543 624 - -
Lal5g1187 809 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 4 435 703 - -
Lal5g1187 809 PANTHER RIBONUCLEASE III 435 703 IPR011907 GO:0003723|GO:0004525|GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1187 Lal-Chr5 14632195 14642067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1187 - - lang:109328842 499.204