Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0306 ATGACTGAATCCTTATATTCCTTTCATTCTCTCTCTCACTCTCAACCTCCTTCACCACATGGAGGTGGAAACAAAGATGCAAATGAAGATGAGCAGTTTCAAGAAACTGAGATTTTCGAGGACACACTAGTGATTAATAATAGTCCCTTTACTGAAAATCTCAATCTGAACACTGAGCTTGTGGAGGATTCAGACCCTGAAGAGAATATGACAAGTGGTGCAATATGTGAGCATGAACAAGAAGTAGTTCTTGATAGTGAGGATGAAGAAATGGAAAATGGTAAAGTAGTAACTGAGGATGAATCTAGTCCGGCATTAAGAAATCCTTTGATGCGTTTCCAGAAGAGACAGATGAAGCCATCTCGTGAGCAAGCAGTGTCAAATGCCACCACCCCCGAGAAATCTTCTACGGGGGACAAAGAAGTTCTGACTGGTTCTGACAGATTTTATGACAACGGTCATCTATGTCTACCTGCAAGGTTAAATCATATTCACTCACCCAGTCCAGGGGATTCAACCCAAGATGCTCTTGGCTTTGTGGATCGGTACTTGTCTTCTAACAGCGTGGATTTATTCCAAGGAGTTCAGCATAGAAAGGGAACTCGAGTTAAATCACCTTATGTCCCAAGTGCAAGAGGATCTCTAAGTTTGGCCAAAAAAATTAAAGTTCGAACTCTAAAAGAGGAAATTGAACCCTTCAAATTGGTTGAAAGTGATCAGAATGACAAAGGAGCTGGTATCTTTTGCAAAAATAGTGAAGCATCTTCAAACTTTAAAATCTACAGAGAGACATATACGAGAAGACAGAAAAAAGGTGCGCATCTTCAGAATCAAGGGAACTGTAGTACAGGTAATGGATGTGAAGAGAAGTTAGTGCAAGGATCGGGAATGATAACAGAAAATAATAACCCTATGAAGGAGTTAGATGTTCAATCAAGTGCAACAAGAGAGAATGTTGATGCCTATTCCAGTGTAACAAATACAGAAGCCATGCCTGATATTGGTTTAGACACTCAAATAGCCGCCGAAGCTATGGAGGCCTTAGCCTATCTATCCCCTTCTGGTAGTCATTTTAATGATGCTCACCAACCAGCAAATGCACTTGATGGCTCTTTGAGTGATTTGACGGAGAATGAATCTCATCTGGGAATTTCTGCAAACAGACAGAAACCTGGTTTACAGTCTATCACAACAAAATCAAACAAAAGAGATGTCTCTTCCTGTAGCTTTAGTACAGTAACTTCTTCTTCCTCTTGCAAGAACACTGACAATCAGGATCCAAAACTTGCCTTCGGTAAAATTAAAAGGATATTGGAAAGCAAGTCAAATACTGAGGGACACTTTGAAAATAATACTAATTCTCCAATATCCCATGAACATGTCTCATCCGAACAGGGTTGCTCACCAGGAGAGTACAAGAACTTCCAACGTGCTGCCAAGGAACAGAAAAATTGGAATAATGAGAGCAGGTGGACAAGAATCAAAGATCAACCAAGCCATCATACAGGGAGGAATAATAGTGTCAAGGAGGAAGGCATTATTAGACACAAAAGGAAGGAGAATGATTTGGCCAATGATTCATTGACGTTGGATGTTAGCACAAAATATCTGAAATTGCCTTCCAATTCATGTGGGGTGACTAGGAAGAGCAGGTTGAATCATCAAGTTCAAACTAGTCCACAGCTATCTGCATGTAGCAGTCTTTTAAGGATTGATTCTTGGCTTTACCCAAAAAGACCAAGAGGAAAAAGAAAGCGGCTTAATGTGCAAATCGATCTTGATGCACCTTCAATTTTGTGTATTGTTGGAAAAGAAAACGTCCTTTCCACTCGAAATCTAGAAGGCCAAGATGATGTCGATGAATCATGTTTACCTCACACCCATCCACTTCTCAAAATTCCAAGTATTGACAATGGTGAATGCTTGTTACAGTGGGATTCTGTTCAACCAGGTTTACCTGGTGATGCCATGACATTTGAAAACATGCATGAGAAGCATCCCTTATTGCTGGCACATGTTGAAATATCATCGAACAAAAGCATTGCAAAACAGAGTTTGGAAAATCCAGCTCCAGACACCTCAACTGAAGGAGTAAATATTTCAAAGGCTAAACAAACATATAACGAGCATAAAAAAAAGCCGTACAACAAAAACTTGCCAAAGTCACCCCTTTTCAAGGAGCTTAACAGATTAGGAGTATCTGAGTTCAGACAAGATCTGTCATGGAAAGATCTGAGACAGCGAAGAGATATGACATATGTCCGAGTTCTGTTTAGCCAGCATTTGGATGACAGCGTCATCAAGCAGCAGAAAAAGATCTTGGCACGGTTCAACCTTTCAGTTGCATCTAGCTCAATGGAGGCCACACATTTCGTAGCAGACAAATTTACTCGTACAAAGAATATGTTGGAAACAATGGCTTTTGGTAAATTTGTGGTGACTCACTTTTGGCTTGAGAGCTGTGGGCAAGCCAACTGTTTTATTGATGAGAAAAAATACATCCTGAGGGATGTACAAAAAGAAAAGGAAATAGGCTTTAGCATGCCCGTTTCTCTCATTCGGGCAAGAGAGAAGCCACTCCTGATGGGTAAACAAGTCTACATCACACCACACGTTAAACCTGACAAGGAAGTCCTCACGAGCTTGATCACAACTGTTCATGGCCAGGTAGTGGATGATAGTCAGATATGTCCGGACAAGAATGATAAGATCTCAGATGATCTATTGATCCTTTCTTGTGAAGACGACTATGCAATTTGCCACCATTTCCTTAATAGAGGAATTGCTGTTTACAGTTCAGAGCTTCTTCTGAATGGAATTGTAATCCAGAAGTTGGAACTTGAGAGACATCAACTCTTCATGAATCATGTTACAAGGAATAACCCAGGTACGTTTAATCGGTTCGGGAAGGTTTACAAAAGGCGTTTGAGACCTGTATCTGGACCATAG 2949 0.4056 MTESLYSFHSLSHSQPPSPHGGGNKDANEDEQFQETEIFEDTLVINNSPFTENLNLNTELVEDSDPEENMTSGAICEHEQEVVLDSEDEEMENGKVVTEDESSPALRNPLMRFQKRQMKPSREQAVSNATTPEKSSTGDKEVLTGSDRFYDNGHLCLPARLNHIHSPSPGDSTQDALGFVDRYLSSNSVDLFQGVQHRKGTRVKSPYVPSARGSLSLAKKIKVRTLKEEIEPFKLVESDQNDKGAGIFCKNSEASSNFKIYRETYTRRQKKGAHLQNQGNCSTGNGCEEKLVQGSGMITENNNPMKELDVQSSATRENVDAYSSVTNTEAMPDIGLDTQIAAEAMEALAYLSPSGSHFNDAHQPANALDGSLSDLTENESHLGISANRQKPGLQSITTKSNKRDVSSCSFSTVTSSSSCKNTDNQDPKLAFGKIKRILESKSNTEGHFENNTNSPISHEHVSSEQGCSPGEYKNFQRAAKEQKNWNNESRWTRIKDQPSHHTGRNNSVKEEGIIRHKRKENDLANDSLTLDVSTKYLKLPSNSCGVTRKSRLNHQVQTSPQLSACSSLLRIDSWLYPKRPRGKRKRLNVQIDLDAPSILCIVGKENVLSTRNLEGQDDVDESCLPHTHPLLKIPSIDNGECLLQWDSVQPGLPGDAMTFENMHEKHPLLLAHVEISSNKSIAKQSLENPAPDTSTEGVNISKAKQTYNEHKKKPYNKNLPKSPLFKELNRLGVSEFRQDLSWKDLRQRRDMTYVRVLFSQHLDDSVIKQQKKILARFNLSVASSSMEATHFVADKFTRTKNMLETMAFGKFVVTHFWLESCGQANCFIDEKKYILRDVQKEKEIGFSMPVSLIRAREKPLLMGKQVYITPHVKPDKEVLTSLITTVHGQVVDDSQICPDKNDKISDDLLILSCEDDYAICHHFLNRGIAVYSSELLLNGIVIQKLELERHQLFMNHVTRNNPGTFNRFGKVYKRRLRPVSGP 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0306 982 Gene3D BRCT domain 857 959 IPR036420 -
Lal5g0306 982 Gene3D BRCT domain 744 856 IPR036420 -
Lal5g0306 982 CDD BRCT_PAXIP1_rpt6_like 860 946 - -
Lal5g0306 982 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 23 960 - -
Lal5g0306 982 MobiDBLite consensus disorder prediction 1 37 - -
Lal5g0306 982 MobiDBLite consensus disorder prediction 120 139 - -
Lal5g0306 982 ProSiteProfiles BRCT domain profile. 746 835 IPR001357 -
Lal5g0306 982 MobiDBLite consensus disorder prediction 483 518 - -
Lal5g0306 982 MobiDBLite consensus disorder prediction 444 470 - -
Lal5g0306 982 MobiDBLite consensus disorder prediction 442 518 - -
Lal5g0306 982 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 752 835 IPR001357 -
Lal5g0306 982 MobiDBLite consensus disorder prediction 1 21 - -
Lal5g0306 982 MobiDBLite consensus disorder prediction 115 144 - -
Lal5g0306 982 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 23 960 - -
Lal5g0306 982 SUPERFAMILY BRCT domain 748 851 IPR036420 -
Lal5g0306 982 CDD BRCT_MDC1_rpt1 754 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0306 Lal-Chr5 2698836 2704365 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0306 K14972 - gmx:102659913 1191.79