Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0285 ATGAGTAGCTTAACAACGAGTTTCTCAATTCGAATATGTAACTCCCGTTGTGACCTAATTCCTATACGACATCGTTTCATTCGTCAATTCATCAAAACACGTTTCACTCTTTTACCAACCAAATCACTTAGACCATATCCAAAGCTTGTGTGCATGGCGGAACCTTATTTGATAACCAAGCTTGAATCAGCGGAGAAGACCTGGAAAGAATTATCGGTGAAGTTGGCTGATCCAGATGTTGTGTCTAATCCCAGTGAGTATCAAAAGTTGGCACAATCTGTGTCTGAACTCGACGAGGTTGTGTCCACATACCAGAGTTTTAAAGAGTGCGAGAAGAACCTAGAAGAAACTAAAGCTTTAGCAAAGGATGATGGCAATGATGAGGATATGGCCCAAATGATATCATATGAAGTTGAATCTTTGTCAAGGCAAATGGAAGAGCTTGAGGGAAAGCTTAAGTTGTTACTGCTTCCCAGTGATCCTCTGGATGCAAGAAACATAATGCTTGAAGTACGAGCAGGTACCGGAGGTGACGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAAATATAGTGAACGGAGTTCTTGGAAGTTCTCTCCTGTCTCATGCTCTGAGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAGATAAAAGGAAAACGTGTCTATAGTAAATTAAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCTCTAACAGAAACACAGGGTCGGGTACATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTTGAAATCGACCCAAAAGATATTGAGCTAACAACGGCACGTTCTGGGGGTGCAGGAGGCCAAAATGTTAATAAGGTGGAAACAGCCATTGATCTAATCCATAAACCAACTGGAATCCGCATCTTTTGTACTGAAGAAAGAACTCAACTTCAGAACAGGCATCGCGCTTTTCAGTTGCTCCGAGCAAAACTCTTAGAAATTAAGGTAAGGGAGCAGCAAGAGTCAATACGAAACCAAAGGAAATTACAGGTTGGTACAGGTGCACGAGCAGAGAAAATTCGGACATATAATTACAAGGACAATAGGGTAACTGATCACAGATTGAAGATGAACTTTGAGCTCACCTCTTTTCTTAACGGTGATATAGAAAATGCTGTTCAGTCTTGTGTTACAATGGAGCAAAAGGAGCTTCTTGAAGAACTTGCTGACTCTGTAGGAGCTCCTGCTGGTTGA 1260 0.4198 MSSLTTSFSIRICNSRCDLIPIRHRFIRQFIKTRFTLLPTKSLRPYPKLVCMAEPYLITKLESAEKTWKELSVKLADPDVVSNPSEYQKLAQSVSELDEVVSTYQSFKECEKNLEETKALAKDDGNDEDMAQMISYEVESLSRQMEELEGKLKLLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKYSERSSWKFSPVSCSEAEKGGYKTYVMEIKGKRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVEIDPKDIELTTARSGGAGGQNVNKVETAIDLIHKPTGIRIFCTEERTQLQNRHRAFQLLRAKLLEIKVREQQESIRNQRKLQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLNGDIENAVQSCVTMEQKELLEELADSVGAPAG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0285 419 Coils Coil 331 351 - -
Lal5g0285 419 SMART PCRF_a_2 119 234 IPR005139 GO:0006415
Lal5g0285 419 Gene3D - 163 275 - -
Lal5g0285 419 PANTHER LD18447P 12 417 - -
Lal5g0285 419 Pfam PCRF domain 65 259 IPR005139 GO:0006415
Lal5g0285 419 Gene3D - 51 161 - -
Lal5g0285 419 Coils Coil 131 151 - -
Lal5g0285 419 SUPERFAMILY Release factor 66 407 IPR045853 -
Lal5g0285 419 Gene3D - 333 417 - -
Lal5g0285 419 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 12 417 - -
Lal5g0285 419 Pfam RF-1 domain 266 376 IPR000352 GO:0003747|GO:0006415
Lal5g0285 419 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 283 299 IPR000352 GO:0003747|GO:0006415
Lal5g0285 419 Hamap Peptide chain release factor 1 [prfA]. 57 411 IPR004373 GO:0006415|GO:0016149
Lal5g0285 419 Gene3D - 276 332 - -
Lal5g0285 419 TIGRFAM prfA: peptide chain release factor 1 53 411 IPR004373 GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0285 Lal-Chr5 2537992 2544366 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0285 K02835 - gmx:100777225 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0285 5 2537992 2544366 Lal5g0285 5 2537992 2544366 ECH