Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0271 ATGGCTATGGTAGCAGTTAGTGTGCATAATCAATTCCTCTTCTTCTCCACAAAATCAATTTTGAGAAGTAGAATTATAACAAATCCATCATGTTTTTCCACTTACAGTACCAAAATTCTTTTAAATTCACATAAAAAGATTCAATTTTCACTCATTTCATGCTCTTCTTCACAGACCCCAGAAACTGCTGATATTCAAAGTCCTGAATCTTGTGTCAATTTGGGTCTTCAGCTTTTTTCTAAAGGAAAAGTTAAAGATGCTTTAACACAGTTTGAAACAGCACTTTCTTTGAATCCTAATCCTATTGAGGCCCAAGCTGCTCTTTATAACAAAGCTTGTTGCCATGCATACAGAGGGGAAGGAAAGAAAGCTTCTGATTGTCTCAGAACTGCTTTGAAGGAATACAACCTCAAATTTGGTACAATTCTCAATGATCCAGATTTGGCATCCTTCAGAGCTTTGCCTGAATTCAAGGAACTACAAGAAGAGGCCAGGCTGGGTGGAGAAGATATTGGCAACAGTTTTCGAAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGCGGGGTTAGAAGATTCTTTTATGTAGCATTCACAGCTGCAGCAGGAATATCATTGTTTTTGACAGTGCCGAGGCTCTTTCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATCTCTTGGAAACTGCTGGTAATGCTGCCATTAACATTGGAGCACTTCTTCATTATATGACTAAGCATCAGAATCAGCAATGTGCAGGTATTGTTGTTTTTGTGGCATTATTCTTGTGGGACAATAAAAAGGAGGAGGAGCAGCTTGCACAAATATCCCGAAATGAGACACTGTCGAGGTTACCTTTGCGCCTTTCGACTAATCGAATAGTTGAACTTGTGCAGCTACGTGACACAGTTAGACCAGTTATATTAGCAGGGAAAAAAGAAACAGTATCTTTGGCACTGGAAAGAGCAGAGAGATTTCGAACCGATCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTCATTTGGGGAGAAGACAAGGAAACCAAAATTGAGAAGAAAGGTTTTGGAATTCGACCAAAGGCTGCTGAAGCTCTTCCATCCATTGGGGAAGATTTTGAGAAGCGAACGCAGTCAATAAGTGCAAAATCTAAGTTGAAAGCTGAGATAAGGTTCAGGGCTGAAGTTGTGTCACCAGCAGAATGGGAAGGGTGGATAAGGGATCAGCAGAAGTCGGAAGGAGTTACTGTCGGCGAAGACGTGTACATAATACTGCGCTTAGACGGACGAGTTCGAAGATCCGGGAAAGGTGTGCCTGATTGGCAGCAAATTGTGAGGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1386 0.4141 MAMVAVSVHNQFLFFSTKSILRSRIITNPSCFSTYSTKILLNSHKKIQFSLISCSSSQTPETADIQSPESCVNLGLQLFSKGKVKDALTQFETALSLNPNPIEAQAALYNKACCHAYRGEGKKASDCLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGNSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFLTVPRLFRAIQGGDGAPDLLETAGNAAINIGALLHYMTKHQNQQCAGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSLALERAERFRTDLLRRGVLLVPVIWGEDKETKIEKKGFGIRPKAAEALPSIGEDFEKRTQSISAKSKLKAEIRFRAEVVSPAEWEGWIRDQQKSEGVTVGEDVYIILRLDGRVRRSGKGVPDWQQIVRELPPMEAFLSKLER 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0271 461 Pfam Low psii accumulation1 / Rep27 176 243 IPR021883 -
Lal5g0271 461 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 21 461 - -
Lal5g0271 461 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 21 461 - -
Lal5g0271 461 Gene3D Tetratricopeptide repeat domain 47 165 IPR011990 GO:0005515
Lal5g0271 461 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Lal5g0271 461 SMART tpr_5 105 138 IPR019734 GO:0005515
Lal5g0271 461 SMART tpr_5 68 101 IPR019734 GO:0005515
Lal5g0271 461 SUPERFAMILY TPR-like 65 134 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0271 - - gmx:100784188 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0271 5 2373616 2379241 Lal5g0271 5 2373616 2379241 ECH