Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0215 ATGCAGAAGCAAAGACTGCGATCAGGTAGGGATGACAACAGGGCCGGGCGGACACGGGTAATGCATACTCGTGCCCATGTCCGCACTATTTGCGGGTTGGAGGGTAAGGTGGCTCTAATCACAGGGGCAGCTAGTGGAATTGGAGAAGAAACAGTGAGACTATTTGCTGAAAATGGTGCACTTATTGTTGTAGCAGATGTTCAAGATGAACTTGGTGAACAAGTTGTAGCATCAATAGGCTCAGAAAAAGTGATTTACCACCATTGTGATGTAAGAGATGAAAAACAAGTTGAGGAAACAATCAAATTCACTTTAGAAAAATATGGGCACATAGATATCCTATTTAGTAATGCTGGGATACTAGGCACCTTATCAAGCATCCTCGAATTCGATCTTGATGAATTCGACAACATTATATCGACAAATGTTCGTGGCGCAGCTGCGACAATTAAGCACGCGGCTCGCGCCATGGTTGCGAAAAAAATCCAAGGATCTATTATATGCACAACTAGTGTTGCAGCTTGTATTGGTGGAGCTGGTCCTCATGCATACACAATATCAAAACATGGTCTTGTTGGGTTAGTAAAAGCAGCATGTAGTGAACTTGGTGCTTATGGAATTAGGGTTAATAGTATTTCACCTTATGGAGTTGCTACTCCTCTTTCATGCAAAGGTTTAAACCTTGAACCTCATGAAGTTGAAGATTATAGCTGCTCTGAGGCAAATCTGAAAGGTGTTGTGTTGAAGGCTAAGCATATTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTATTTACATCAGTGGTCATAACTTGGTGGTTGATGGTGGATTCTCTGTGGTTAATAGGAGTAAGTATTAG 864 0.4201 MQKQRLRSGRDDNRAGRTRVMHTRAHVRTICGLEGKVALITGAASGIGEETVRLFAENGALIVVADVQDELGEQVVASIGSEKVIYHHCDVRDEKQVEETIKFTLEKYGHIDILFSNAGILGTLSSILEFDLDEFDNIISTNVRGAAATIKHAARAMVAKKIQGSIICTTSVAACIGGAGPHAYTISKHGLVGLVKAACSELGAYGIRVNSISPYGVATPLSCKGLNLEPHEVEDYSCSEANLKGVVLKAKHIAEAALFLASDEAIYISGHNLVVDGGFSVVNRSKY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0215 287 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Lal5g0215 287 PRINTS Glucose/ribitol dehydrogenase family signature 109 120 IPR002347 -
Lal5g0215 287 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Lal5g0215 287 PRINTS Glucose/ribitol dehydrogenase family signature 184 203 IPR002347 -
Lal5g0215 287 PRINTS Glucose/ribitol dehydrogenase family signature 205 222 IPR002347 -
Lal5g0215 287 PRINTS Glucose/ribitol dehydrogenase family signature 243 263 IPR002347 -
Lal5g0215 287 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B 32 285 - -
Lal5g0215 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 120 IPR002347 -
Lal5g0215 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Lal5g0215 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 203 IPR002347 -
Lal5g0215 287 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 32 285 - -
Lal5g0215 287 Gene3D - 26 285 - -
Lal5g0215 287 Pfam Enoyl-(Acyl carrier protein) reductase 42 280 - -
Lal5g0215 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 281 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0215 Lal-Chr5 1860588 1862754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0215 31 278 Acyl Lipid Metabolism Gene Families AT3G55290 31.154 6.07e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0215 - - gmx:100811279 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0215 5 1860588 1862754 Lal5g0215 5 1860588 1862754 ECH