Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0175 ATGTACTCTTTCCTACAAAGAACGATTCAAACCTCCAAAATTCGACAAATTTGTAGGTTTTCCTTGTTCCTACAAAATCTACAAACAACCTCGTCTCAGTTATCACATAACATTATCGTTTCAAATCACAGTTACAATTATGGTTTTCACCAACGTAGTATTGTGTCTCAGAATCAGTTTCGATGTTTTGGTTCTGAATCAGATAGTATCACAGTGGAGGGAATTATTGCAAACAATTGGAACATTCTAGATGAGGATGATGGTGATTGGAAGAGTCATGCTGCTTCTGTAGCTCAATCTATTGATTTAATCAAACGACGGTTACAGTGGAAGAAACTGAAGGTTAGGTTGGATTTGCTATCAGCTCAGTTAACTAAGCCAGACCTTTGGGATGATCCTGTGCATGCTGGAAAAATTAGCCGTGAGCATGGATCACTTTTAGGAAAAGTGAAAGAGGTTAATGCATTGGAGCAAGAGTTGATTGAGCATATTGATATGATAAAGCTTGCTCGCGAAGAAAATGATGAAGAATTGGAATCGGAATCACTGAAAGCTTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAACTGGAGGCATTGCTTTCAGGGGAGCATGATTATTGTTCTTGCTACATTGAGGTTCAGGCTGGGGCTGGGGGTACTGAGAGCATGGACTGGGCTTCAATGGTCATGCAGATGTATAAATCATGGGCCCAGCGACGTGGATATAAAGTAATTGTAATGGAAGAAATGGCTGGTGAGCTTGCAGGAATCAAGCGAGCCACAATCAAAGTAGATGGTGAGTTTGCATTTGGCTATGCCAAAGCAGAAATAGGAGTGCACAGGCTTGTGCGCATATCACCTTTTGACAGTAATAAACGCCGGCATACTTCATTTGCTGCTGTAGCAGTGATTCCCATCCTCGGTGATGGATCAACCCGTGTACAAATTAATGAATCCGATCTTCGAATTGAACGATTTCGCTCAGGTGGACCTGGTGGCCAGCATGCTAATACAACAGATAGTGCTGTAAGAATAATCCATATTCCCACAGGAATTACTGCAACTAGCCAGAACGAAAGATCACAACATATGAATAAGGCTTCAGCATTGGCTGTGCTTCAGTCTAGATTAGACCAAATCGAGATGGCGCGCCAGGCTCAATTGAATGCACAACATACACAATCTCTCACTGACATAACTTGGGGCAGTCAGATACGTAGTTATGTGCTCCATCCGTACCGAATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATATAGATGCTTTCATTCTAAGCTATCTATCAGCATCTTTGGACAAAGATGAAAATAATGTCATTCCTCATCAAATTCTGAATCAAAGTCTGCACAAGGAAGCATTTGATTTTGCTGCCTATTGTTATGTTTTGTTTTATTGTCACTACCATGCCATGGATTTCAGAAAAAAGAGGATCCAGTTTCTTGTACTTGTCGCTGGCATCATTGTTCTTAGTATTACAGCTAAGAAATGCAGGCAGATTGTTGGGGAGAAAGCATCATCACAAAGTGGAAAATTCACATTCTTAAATTGCTTTGATATGAGCACTGGAACTATAGCATGTGGTGTCAAGGAAGGTGTGAAGCTCTATGTTTACAACATTAGAACTTCTCATGTTGAAAAAGAAAGGCATAATGCAATTCAATCCGCTCTTATTGATGCCGCTTCGCAGGGAATGTCAACAAAAGATTCATCAAAACTTGCTGAGAAAGAAGGTAAAAAGGCGGCGAAATTGGCTTCGCGTAAGGCCGAGCGAATTACAGGTCCTATAATCTCTTCGGGATGGGACTTTTTCGAAGCTGTATACTATGGTGGTACGGTTGCAGAAGGATTCTTTAGGGGAAGTTGTACCTCATTTGGTGCTTATGGTGGAGGCTTCATAGGGGAGAAAAAGCTTGGAAGATTTGGTTATCTTATTGGAAGTCTTTTTGGAAGTTGGTTTGGTGGTAGAATAGGGCTAATGCTATATGATGTTTTTAATGCATTACACTTCTTATTGTAG 2073 0.4071 MYSFLQRTIQTSKIRQICRFSLFLQNLQTTSSQLSHNIIVSNHSYNYGFHQRSIVSQNQFRCFGSESDSITVEGIIANNWNILDEDDGDWKSHAASVAQSIDLIKRRLQWKKLKVRLDLLSAQLTKPDLWDDPVHAGKISREHGSLLGKVKEVNALEQELIEHIDMIKLAREENDEELESESLKALLNMRRNAKEKELEALLSGEHDYCSCYIEVQAGAGGTESMDWASMVMQMYKSWAQRRGYKVIVMEEMAGELAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTRVQINESDLRIERFRSGGPGGQHANTTDSAVRIIHIPTGITATSQNERSQHMNKASALAVLQSRLDQIEMARQAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDIDAFILSYLSASLDKDENNVIPHQILNQSLHKEAFDFAAYCYVLFYCHYHAMDFRKKRIQFLVLVAGIIVLSITAKKCRQIVGEKASSQSGKFTFLNCFDMSTGTIACGVKEGVKLYVYNIRTSHVEKERHNAIQSALIDAASQGMSTKDSSKLAEKEGKKAAKLASRKAERITGPIISSGWDFFEAVYYGGTVAEGFFRGSCTSFGAYGGGFIGEKKLGRFGYLIGSLFGSWFGGRIGLMLYDVFNALHFLL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0175 690 SUPERFAMILY Release factor 114 449 IPR045853 -
Lal5g0175 690 Pfam PCRF domain 115 303 IPR005139 GO:0006415
Lal5g0175 690 Gene3D Release factor 89 199 - -
Lal5g0175 690 Hamap Peptide chain release factor 2 [prfB]. 86 450 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lal5g0175 690 Pfam RF-1 domain 315 422 IPR000352 GO:0003747|GO:0006415
Lal5g0175 690 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 57 456 - -
Lal5g0175 690 Gene3D - 309 405 - -
Lal5g0175 690 SMART PCRF_a_2 168 278 IPR005139 GO:0006415
Lal5g0175 690 Coils Coil 153 173 - -
Lal5g0175 690 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 57 456 - -
Lal5g0175 690 Gene3D - 213 442 - -
Lal5g0175 690 TIGRFAM prfB: peptide chain release factor 2 91 448 IPR004374 GO:0005737|GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0175 Lal-Chr5 1498805 1506344 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0175 K02836 - gmx:100797427 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0175 5 1498805 1506344 Lal5g0175 5 1498805 1506344 ECH