Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0174 ATGTTTTTGGTGGATTGGTTTTATGGGGTTTTAGCATCACTTGGGTTATGGCAAAAAGAGGCTAAGATCTTATTCTTAGGCCTTGATAACGCTGGCAAAACCACCTTGCTTCATATGCTCAAAGATGAGAGATTGGTACAGCATCAGCCAACACAGTATCCTACATCGGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATCTTGGTGGTCACCAGATTGCTCGAAGAGTCTGGAAAGATTACTATGCGCAGGTTGATGCAGTGGTCTACTTGGTTGATGCTTTTGACAAGGAAAGATTTGCTGAGTCGAAAAAAGAACTAGATGCTCTCCTTTCCGATGAATCTTTGGCCAATGTCCCGTTCCTTATCCTCGGAAATAAAATCGATATTCCATATGCTGCCTCGGAAGAAGAGTTACGATACCATTTGGGTCTGACGAACTTCACCACAGGCAAGGGTAAGGTGAATTTGTCGGACTCAAATGTTCGTCCCATGGAGGTATATATGTGCAGTATTGTGAGGAAAATGGGTTATGGAGATGGTTTCAAATGGCTTTCTCAGTACATCAAGTAG 582 0.4244 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAFDKERFAESKKELDALLSDESLANVPFLILGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLSDSNVRPMEVYMCSIVRKMGYGDGFKWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0174 193 SMART arf_sub_2 4 193 - -
Lal5g0174 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lal5g0174 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Lal5g0174 193 CDD Sar1 2 192 - -
Lal5g0174 193 PANTHER PROTEIN SAR1A, PUTATIVE, EXPRESSED-RELATED 1 193 - -
Lal5g0174 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Lal5g0174 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 138 IPR005225 GO:0005525
Lal5g0174 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Lal5g0174 193 Gene3D - 1 193 IPR027417 -
Lal5g0174 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lal5g0174 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lal5g0174 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lal5g0174 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lal5g0174 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lal5g0174 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lal5g0174 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0174 Lal-Chr5 1495090 1497844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0174 19 146 Miscellaneous Gene Families AT5G05670 28.873 6.32e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0174 K07953 - gmx:100305650 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0174 5 1495090 1497844 Lal18g0376 18 3218291 3220916 ECH
Lal14g1574 14 16324540 16327248 Lal5g0174 5 1495090 1497844 ECH
Lal7g0969 7 15984576 15987032 Lal5g0174 5 1495090 1497844 ECH
Lal19g1127 19 14846281 14849048 Lal5g0174 5 1495090 1497844 ECH
Lal5g0174 5 1495090 1497844 Lal5g0174 5 1495090 1497844 ECH
Lal3g1432 3 20260319 20263228 Lal5g0174 5 1495090 1497844 LSH
Lal5g0174 5 1495090 1497844 Lal18g0376 18 3218291 3220916 LSH