Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0057 ATGGGTAGTAGTGAGAAGAGTTTAAAGGTTTTTCATTTGAATCGCCAAGTACATAATCAACATCACTATGGGAAAAAACAACAAGAGATTAGACATGTTCCAAAAGGGTGTCTTGCAATTAAGGTAGGTCAAGGAGAAGAAGAAAAACAAAGATTTGTGGTGCCTGTTATATACTTCAATCACCCTCTCTTCATGCAACTACTCAAAGAGGCTGAAGAAGAATATGGTTTTGATCAAAAAGGAACCATTACAATCCCTTGTCAAGTTGAACAATTTAGGAATATTAGAGGCTTGATTGATAGGGAAAAATCCCTTCACCATAATCATCATATTGGTTGCTTTGGCTTGTGA 351 0.3618 MGSSEKSLKVFHLNRQVHNQHHYGKKQQEIRHVPKGCLAIKVGQGEEEKQRFVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCQVEQFRNIRGLIDREKSLHHNHHIGCFGL 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0057 116 Pfam Auxin responsive protein 26 95 IPR003676 GO:0009733
Lal5g0057 116 PANTHER SMALL AUXIN-UP RNA-RELATED 22 110 - -
Lal5g0057 116 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 22 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0057 Lal-Chr5 621270 621620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0057 32 112 Calmodulin-binding Proteins AT5G20810 46.341 6.81e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0057 K14488 - pvy:116108881 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0057 5 621270 621620 Lal5g0057 5 621270 621620 ECH
Lal5g0057 5 621270 621620 Lal18g1053 18 13560682 13561008 ECH
Lal5g0057 5 621270 621620 Lal3g1536 3 21057473 21058445 LSH