LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal4g1648	ATGCCAACCAAGAAAAAAACCTCCAAGCAAAATGCCAACCAAGAGTGTGGTAGTCCTAGGGTTCCAAGAGCACAGAAGAAGGTCTCTGAAAAGGGACAAGCACTTGGAAAGAAAGCCTCTGACTTAATTACATCCTCTGCTAGAAAGAGTAAACCTGTTAGCACTCTTGGGAGTAAAACTGGAGATCCAATTCCCTCAACTGATTTGAGTACAGGATATGAATTTATGGATCACGGGATTTCCAATGTTTGTTTGGAAATTGATGAAGTTGATGGTACTTCAGTCGATTTTTTGGGTTGTAACAAGCAAGCAGTAAATCTTGAGTCTGGAACTATATTTTCTCCCGGATTTCACTTATCTAGAGGTTCTGGAGGGAAACTTGTTGACAGAGTTGATTTTGTCACAATTTTTAAGAATGAGGACCAAAAAAGAATATCTCTAGGCCAAGGAATGGAGTTATCACGAGAGGATGTCTTAGATGTCCATGTTAGTCAAGATACTGCGATGGAAGTGGACATAAACAATTCTTCCAACTACTCCAACATACCGAGATGTGATGATCATTTGGTTGCTTTAGGCACACAAGATATGAATGATTGCAATTCTGATTTTGGTGGAAATGGTGTTCCCACGGAAGTTTCTACTATATATCTTTCCATGAAAAACTCAAAGCTGGAGTGCGTTGACGAGCATGGTCAGGATTCAATTTCAGAGTTATGTGAAGAGGATGATGAATTTGAGGACATTGATGATTTTGACCCTTACTTATTCATAAAGACCTTGCCAGACTTGTCAACGGTGGTTCCAACTTTCAGAAAGTTATTGTTACCTAAGCAGACAAGGAGTTGCCCTCCGACTACTCTAGTCCTGGACTTGGACGAAACTTTGGTGCATTCTACCTTGGAACCTTGTCAGGATGTAGACTTCACTTTTCCTGTAAATTTTAATTGTGAGGAACACATCGTTTATGTACGCCGCCGTCCCCACCTTCAAGATTTCCTGGAGAGAGTTGCTGGCCTTTTTGAGATTATTATATTTACAGCTAGTCAAAGTATTTATGCTGAGAAACTTCTAAATGTGCTTGATCCGAAGCGCAAGATATTTCGCCACCGTGTGTACCGTGAATCATGTGTTTATGTGGAGGGCAATTACCTTAAAGACTTATCTGTGCTTGGTCGTGATTTGTCACGTGTTATAATAATTGACAACTCCCCACAGGCATTTGGGTTCCAGGTGGACAATGGAATACCAATTGAGAGTTGGTTTGATGATCGTTCGGATGAAGAATTGCTATCATTACTTCCATTTTTGGAGAGCTTGGTTGGGGTTGATGATGTAAGGCCACTGATTGCAAAGAAGTTCAACCTCCGGGAGAGAATTGCTGTGGCTGCACAACCTCCAAGTACAAATGGAAGAGATTTCTTATCAGAATGA	1434	0.4086	MPTKKKTSKQNANQECGSPRVPRAQKKVSEKGQALGKKASDLITSSARKSKPVSTLGSKTGDPIPSTDLSTGYEFMDHGISNVCLEIDEVDGTSVDFLGCNKQAVNLESGTIFSPGFHLSRGSGGKLVDRVDFVTIFKNEDQKRISLGQGMELSREDVLDVHVSQDTAMEVDINNSSNYSNIPRCDDHLVALGTQDMNDCNSDFGGNGVPTEVSTIYLSMKNSKLECVDEHGQDSISELCEEDDEFEDIDDFDPYLFIKTLPDLSTVVPTFRKLLLPKQTRSCPPTTLVLDLDETLVHSTLEPCQDVDFTFPVNFNCEEHIVYVRRRPHLQDFLERVAGLFEIIIFTASQSIYAEKLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVIIIDNSPQAFGFQVDNGIPIESWFDDRSDEELLSLLPFLESLVGVDDVRPLIAKKFNLRERIAVAAQPPSTNGRDFLSE	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal4g1648	477	Gene3D	-	271	455	IPR023214	-
	Lal4g1648	477	MobiDBLite	consensus disorder prediction	1	68	-	-
	Lal4g1648	477	PANTHER	INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED	1	464	-	-
	Lal4g1648	477	SMART	forpap2	284	428	IPR004274	-
	Lal4g1648	477	PANTHER	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	1	464	-	-
	Lal4g1648	477	TIGRFAM	HIF-SF_euk: dullard-like phosphatase domain	286	449	IPR011948	GO:0016791
	Lal4g1648	477	SUPERFAMILY	HAD-like	274	451	IPR036412	-
	Lal4g1648	477	CDD	HAD_FCP1-like	287	418	-	-
	Lal4g1648	477	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lal4g1648	477	MobiDBLite	consensus disorder prediction	39	67	-	-
	Lal4g1648	477	Pfam	NLI interacting factor-like phosphatase	287	447	IPR004274	-
	Lal4g1648	477	ProSiteProfiles	FCP1 homology domain profile.	281	440	IPR004274	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal4g1648	Lal-Chr4	20562370	20567018	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal4g1648	K17616		K12778	gmx:100804307	711.064