Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1647 ATGTCGTTCGCATCATTCTCCATCCTCCGTCACACACCACCCTTCACCGCCACCATCCTCCTCCGGCGCCGAATCTCAATAGTGACCTCCGCCACCCGTCCTCAAAATCCAAAACAATACCAATCCCCAAACAACAAGAACCTTTTGAAAGCAAAAGAAAGATCGAAGAAAGATTTATCATCTTCACATTCACTATCCCCAACCCTCTCCTTTGAACACAAACCCTCTCTCTCCCCTTCCCAAGCCATCGGCACCGTCGCCGCTGCTCAGGCCAACTTCATGCGCGTCATCATCAATAATCCCAACTCTCACCTTCCAGAACCTTCTAATTCCAACAACGACGCTGTTCTAGAACCTTCTACCAAAACCGACGTCGTTTTAGAACATTCTAATAACAATTCGGGGTTGGAATTGTTATGTGTTGTTAGGGCGTTGTTGAAGAAGATAAAGAGGAGAGTTATGGTTGGTGATAAGGTTCTTGTAGGTTCTATTGATTGGGTTGACCGTCGGGGTATGATTGAGAATGTTCTTCAGAGAAAGACTGAGATTCTTGATCCTCCTGTTGCTAATGTAGATCACTTGCTTCTGCTTTTCTCTCTTGATCAACCCAAACTTGAACCTTTTTCGTTAACTAGGTTTTTGGTTGAAGCTGAGTCTAATCAGATTCCAATTACCCTCGCACTCAATAAGATGGAGCTTGTTGATAAAGAGACTGTAAGTTCCTGGAAGGCCAGGCTACGCAGCTGGGGATATGAGCCCATTGTTTGCAGTGTTGAATCCGGTCATGGACTTGATCTTCTTGCATTCAAGTTAAGAGATCAAACAACTGTGGTTGTGGGCCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTTAGGAGCAATCCTCGTGTTTCTGATACTGCAGATGGAGAAAATTGGTTTGAACCTATTTTAGGTAGCAAGTGGTCTGAGAATCAGCGAGTTGGGGAGGTTTCGACAAGAAGTGGTAGAGGGAAGCATACTACTCGCCATGTCTCTCTGCTTCCATTATCTGGAGGCGGTTATCTTGCTGATACTCCTGGATTTAACCAGCCTAGCTTATTGAAAGTGACAAAGCAATCTCTTGCGCAAACTTTTCCCGAAGTCAGTACTGCTTATGTTATCAGGAAAGTGCTCAGCACAAATGAGTCTTCAAAATGTTCATTTAACAATTGCTTGCATCTGGGTGAACCTGGGTGCATTGTGAAGGGGGATTGGGAAAGATATTCATTCTATTTTCAACTTCTTGATGAAATTAGAATCAGAGAGGAGTTCCAGTTGAGGACATTTGGAACTAAAAGGGAAGGCGATGTAAGGTTTAAAATGGGAAATATGGGTGTTCAGCAAGCAGAACCACGGTTGGAACCTAAGAAGCATAGGAGACAATCTCGGAAGAGAGTTAACCAGTCTATCTTAGATGAATTGGATGATGATGACGACACTTTACTTGAGGAGGAGGATGACCCCATTCTAAGGGCATCGAGGAATGAAAATTCTTAG 1524 0.4403 MSFASFSILRHTPPFTATILLRRRISIVTSATRPQNPKQYQSPNNKNLLKAKERSKKDLSSSHSLSPTLSFEHKPSLSPSQAIGTVAAAQANFMRVIINNPNSHLPEPSNSNNDAVLEPSTKTDVVLEHSNNNSGLELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVLQRKTEILDPPVANVDHLLLLFSLDQPKLEPFSLTRFLVEAESNQIPITLALNKMELVDKETVSSWKARLRSWGYEPIVCSVESGHGLDLLAFKLRDQTTVVVGPSGVGKSSLINALRSNPRVSDTADGENWFEPILGSKWSENQRVGEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVSTAYVIRKVLSTNESSKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRFKMGNMGVQQAEPRLEPKKHRRQSRKRVNQSILDELDDDDDTLLEEEDDPILRASRNENS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1647 507 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 70 488 IPR004881 GO:0003924|GO:0005525
Lal4g1647 507 ProSiteProfiles EngC GTPase domain profile. 189 358 IPR010914 GO:0003924|GO:0005525
Lal4g1647 507 CDD YjeQ_EngC 189 425 IPR004881 GO:0003924|GO:0005525
Lal4g1647 507 MobiDBLite consensus disorder prediction 61 78 - -
Lal4g1647 507 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 153 296 IPR004881 GO:0003924|GO:0005525
Lal4g1647 507 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 82 431 IPR004881 GO:0003924|GO:0005525
Lal4g1647 507 Pfam RsgA GTPase 176 362 IPR010914 GO:0003924|GO:0005525
Lal4g1647 507 SUPERFAMILY Nucleic acid-binding proteins 133 180 IPR012340 -
Lal4g1647 507 Gene3D - 174 362 IPR027417 -
Lal4g1647 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 427 IPR027417 -
Lal4g1647 507 Gene3D Probable gtpase engc; domain 3 364 432 - -
Lal4g1647 507 MobiDBLite consensus disorder prediction 450 507 - -
Lal4g1647 507 MobiDBLite consensus disorder prediction 51 78 - -
Lal4g1647 507 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 181 360 IPR030378 GO:0005525
Lal4g1647 507 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 70 488 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1647 K06949 - gmx:100796145 676.396