Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1642 ATGACGGAAAGTGAAAGAAATTCTCAGAAAATGGATAACAAGAAGAAGAAGAAGAATGGCGGATTCCTCATCGCTCTCACCGGAACCGCTGCACTTCTCGCAATTGCGGCCAACCTCGCCATCTCTGCTATCAAGTACCGCAACCAGAAAAATTCTAAGAAGATAAAAGATCTTGCGGGTTCTAAGGTTCGTGTTAACTTATCTGCATCTCAGATTCTTAAGTTGACTCAACAAATTATTGCCAACTCAAACAAGGTCTATAATACTATTGCTTCCATTCCTCTCGATAAGGTTACATACACAAATGTTATATCACCAATTGCAGAACTGCAAGCACAGCAATTCCCACTGATCCAATCTTGTGTGTTTCCAAAGCTGGTCTCTACTTTGGAGGATGTGCGCAAAGCAAGTGCAGAAGCAGAGCGAAGACTAGATGCTCATATTGACATGTGCAGTAAAAGGGAAGATATATATCTTGTTGTAAAAGCATTTGCCGTAAAGGGGGAGTGGGTGAATGCTGAAGCCAAAAGATTTGTTCAAATCCTGATGAGAGACTTTGAGCGAAATGGATTGAACCTCACTGCAAGCAAAAGAGAAGAGTTGCTGCGTCTAAGGGCTCAGATTGATGAGTTAAGCTTTAAATATATTCAAAATCTTAATGATGATAGTACATTTCTTCTTTTCAATGAGGCAGAGTTAGCTGGATTACCTCCAGAGTTTCTGAAGGGTTTAGATAAATCTGAAAATGGAAAGTTGAAGATCTTCCTGAGAAGTCATCATGTTTCTGCTATACTTGAATTTTGCAAGGTAGGAACTACAAGGCGGATGGTATCAGGGGCATATGGAAGTAGATGTGGAGAAGTCAATCTTTCTATTCTAGAAAATCTGGTGCAGCAACGTCATAAATATGCGCGTTTACTAGGCTTTTCAAATTATGCAGAGTATGCCATGGATGCCAGAATGGGAAAGACACCTATACAGGTGTTTGAGTTTTTGGAAGACATATCAACCAGTTTAACTGACGTGGCCACGAAAGAACTTGACATGTTAAAGAATTTGAAGAAGAATGAGGAGGGAGATTTTCCATTTGGAATTGAGGACTTGTTGTATTATGCAAAACGGGTTGAAGAGCACAGTTATGATTTGGACTTTGGCGAGCTCAAGCAATACTTACCAATTAGTTTAGTTCTATCTGGGATCTTCAAAATTGTCCAAGATTTGTTTGGTTTAAGGTTTGAGGAAATCGCAGGAGCAGATGTTTGGCATTGTGATGTTCGTGTTTTTTCAGTACTTGACTTAGGTTCTAGTGAACTCTTGGGTTATTGCTACCTTGATTTGTTCTCAAGAGAAGGAAAATATGGTCATGCTTGTGTTGTGTCTCTCCAAAACAGTGCATTAACAATCAGTGGAGGATGGCAGATACCAGTTGCATTACTAATATCTCAGTGTCAAAAGGATGCTGACAGTGGACCTGGATTATTGCGGTTTTCAGAAGTGGTCAGCCTTTTCCATGAGATTGGCCACGTGGTTCAACAAATTTGCAACCGTGCATCATTTGATAGATTTTCTGGATTACGCGTTGATCCTGACTTTGTGGAAATACCTGCTCAACTTCTAGAAAACTGGTGTTATGAAAGCTATTCTCTGAAGTTGATTTCTGGATTCCATCAGGATATTACGAGGCCCATAAAGGATGACATGTGCAAAACAATAAAAAAATGGAGAACCTCATTTTCTGCCCTAAAATTGAAGCAAGAGATTCTATACTGTCTTTTTGACCAAATCATACATTCAGCAGATAACATAGACATTCAAGAGTTGTTTAAGCATCTTCATCCCAAGGTGATGCTAGGTTTGCTGGCGTTAGAAGGAGCCAATCCTGCTTCATGTTTTCCTTCTAGTGTTGTGGGTTCTGAGGCTGCTTGCTACAGTCGAATATGGAGTGAGGTTTTTGCTGCTGATATATTTACCTCGAAGTTCTGCAATGATGTTTCAAACCAGCATGCTGGCATGCAATTTAGAAACAAGGTAACTTATGGCTACGATATTCCAGTTTTTCACCATGATGTGTATGTACCTCTCAAGGTATTAGCCCCAGGGGGAGGGAAGGATTCTATTGAAGTGTTAACGGAGTTTCTAGGAAGAGAGCCATCAATTCAAGCTTTTATTCAGAACAAATCCAAGTCTCTTTTTAAACTTCCTAGAAAGTCTTCATCATCATCCAAAGGTGGTTCTTCTGAACATCATGGTGCTAGTAGTGGAAAAACCCGTGGTGGTGTTAAAACCAATGATCTTGCTACAAAATCTGTGGGTTCTGCTTCGGTTTCGCAACCCCATCATGGTAATATTAACAACAATAGAGCTCAATTACCATTTGGTGTGAATGAAAATCAAAACCCCAATAGGAGTTTGAATTTCACTTCTTATGAAGCATTGCCTGCATTCAGGGATGTTCCGAATTCCGAGAAGCAGGCTCTGTTTATCAACAAGCTCAAGATGTGTAGTATTGTGTTTGACTTCGCTGATGCGACGAAAAACATCAAAGAGAAGGAGATTAAGAGGCAAACTTTGGTGGAGCTCGTGGATTACGTGACTTCGGCTAATGTGAAATTCTCGGAGAGTGTGATACAACAAGTCGTGAAAACGGTGTCTGCGAATATATTCAGGACGCTTAGTCCTCAGCCACGCGAGAACAAGCCTATTGATGGTGTTGAGTTGGAGGAGGAGGAGCCTTCAATGGATCCCGCATGGCCTCATTTGCAAATTGTGTATGAGCTTTTTCTGCGTTTTGTGGCTTCGCCAGAGCTGGATGCGAAGTTGGCTAAGAGGTTTATTGATCAAGCTTTTGTTTTGAGGCTTCTTGATTTGTTTGACTCTGAAGATCCTAGAGAAAGGGAGTACTTGAAAATGACTCTTCACAGAATCTATGGGAAGTTTATGGCCCATCGCCCTTTTATCAGGAAAGCAATCAATAACCTATTTTTTAATTTTATTTTTGAGACTGAGAAGTGTAACGGTATTGCTGAATTCCTTGAAATTCTGGGGAGCATCATTAATGGTTTTGCACTACCTTTGAAAGAAGAGCATAAACTGTTTCTTGTCCGTGTGCTAATTCCCCTTCACAAACCAAAGTGCTTGGCAATGTATCATCAACAGTTATCTTATTGCATTACTCAGTTTGTGGAAAAAGACTGCAAGCTTGCTGACACCATTATTAGGGGATTATTGAAGTACTGGCCGATAACAAATAGTTCAAAGGAGGTTATGTTCTTGAGTGAGTTGGAAGAAGTTTTGGAAGCAACTCAACAACCAGAATTCCAGCGTTGTATGATGCCATTATTTCGCAGAATTGCCCATTGTTTGAATAGCCCTCATTTTCAGGTAGCGGAAAGAGCTTTGTTCCTGTGGAACAATGACCACATTGTGAACTTAATCAAACAAAATTGCAAAGTGATACTGCCCATTATCTTTCCAGCATTGGAGAGAAACACTAGAACTCATTGGAACCAGGCTGTCCATAGTTTGACTTTGAATGTGCTGAAGATTTTCAATGATCTCGATCCTGATATATCCAAAGAATGCTTGCAAAAGTTTGAGGAAAATGAATCAAAGAAAGATGAAATCAAAGAAGATCGTGAAGCCACTTGGAGACGCTTAGAGGAGCTCGCCATAAAGAGAGCCGCAAATAGCGAAACAATGCTTATTGGTAAAGTATCACCCATTCGCAAATCTGCAGGTTAG 3741 0.4031 MTESERNSQKMDNKKKKKNGGFLIALTGTAALLAIAANLAISAIKYRNQKNSKKIKDLAGSKVRVNLSASQILKLTQQIIANSNKVYNTIASIPLDKVTYTNVISPIAELQAQQFPLIQSCVFPKLVSTLEDVRKASAEAERRLDAHIDMCSKREDIYLVVKAFAVKGEWVNAEAKRFVQILMRDFERNGLNLTASKREELLRLRAQIDELSFKYIQNLNDDSTFLLFNEAELAGLPPEFLKGLDKSENGKLKIFLRSHHVSAILEFCKVGTTRRMVSGAYGSRCGEVNLSILENLVQQRHKYARLLGFSNYAEYAMDARMGKTPIQVFEFLEDISTSLTDVATKELDMLKNLKKNEEGDFPFGIEDLLYYAKRVEEHSYDLDFGELKQYLPISLVLSGIFKIVQDLFGLRFEEIAGADVWHCDVRVFSVLDLGSSELLGYCYLDLFSREGKYGHACVVSLQNSALTISGGWQIPVALLISQCQKDADSGPGLLRFSEVVSLFHEIGHVVQQICNRASFDRFSGLRVDPDFVEIPAQLLENWCYESYSLKLISGFHQDITRPIKDDMCKTIKKWRTSFSALKLKQEILYCLFDQIIHSADNIDIQELFKHLHPKVMLGLLALEGANPASCFPSSVVGSEAACYSRIWSEVFAADIFTSKFCNDVSNQHAGMQFRNKVTYGYDIPVFHHDVYVPLKVLAPGGGKDSIEVLTEFLGREPSIQAFIQNKSKSLFKLPRKSSSSSKGGSSEHHGASSGKTRGGVKTNDLATKSVGSASVSQPHHGNINNNRAQLPFGVNENQNPNRSLNFTSYEALPAFRDVPNSEKQALFINKLKMCSIVFDFADATKNIKEKEIKRQTLVELVDYVTSANVKFSESVIQQVVKTVSANIFRTLSPQPRENKPIDGVELEEEEPSMDPAWPHLQIVYELFLRFVASPELDAKLAKRFIDQAFVLRLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAINNLFFNFIFETEKCNGIAEFLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLSELEEVLEATQQPEFQRCMMPLFRRIAHCLNSPHFQVAERALFLWNNDHIVNLIKQNCKVILPIIFPALERNTRTHWNQAVHSLTLNVLKIFNDLDPDISKECLQKFEENESKKDEIKEDREATWRRLEELAIKRAANSETMLIGKVSPIRKSAG 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1642 1246 Gene3D - 819 1222 IPR011989 -
Lal4g1642 1246 Gene3D Collagenase (Catalytic Domain) 392 542 IPR024079 GO:0008237
Lal4g1642 1246 Coils Coil 130 150 - -
Lal4g1642 1246 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 66 724 - -
Lal4g1642 1246 SUPERFAMILY ARM repeat 825 1205 IPR016024 -
Lal4g1642 1246 Gene3D Neurolysin, domain 3 197 722 IPR024077 -
Lal4g1642 1246 CDD M3A_TOP 73 724 - -
Lal4g1642 1246 PANTHER SACCHAROLYSIN 52 728 - -
Lal4g1642 1246 Pfam Peptidase family M3 268 677 IPR001567 GO:0004222|GO:0006508
Lal4g1642 1246 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 52 728 IPR045090 GO:0004222|GO:0006508
Lal4g1642 1246 Gene3D Endopeptidase. Chain P; domain 1 42 188 IPR024080 -
Lal4g1642 1246 MobiDBLite consensus disorder prediction 733 763 - -
Lal4g1642 1246 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 812 1223 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1642 Lal-Chr4 20516750 20532091 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1642 K01392 - gmx:100793518 1120.15