Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1596 ATGAGCGATCAATTAGCGAAAGCAGAAGAATTTGAGAAAAAAGCAGAGAAAAAGCTAACAGGTTGGGGTTTGTTTGGTTCCAAATACGAAGACGCTTCTGATCTCTTCGATAAATCCGCCAATTCCTTCAAACTCGCCAAATCATGGGACAAAGCTGGAGCTACATACCTCAAGTTAGCAAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAAGCTTATGTTGATGCTGCACATTGCTATAAAAAGACTAATATAACTGAGTCTGTTAATTGCTTAGACCATGCTGTAAATCTTTTATGTGATATTGGAAGACTCTCTATGGCTGCAAGATATCTTAAGGAAATTGCTGAGTTGTATGAGTCTGAACAGAATATTGAGCAAGCTGTTGTTTACTATGAAAAGTCAGCTGATTTTTATGAAAATGAAGAAGTGACAACATCTGCAAACCAGTGCAAGCAAAAGGTTGCTCAATTTGCTGCTCAGCTAGAACAATATCAGAAATCAATTGAGATTTATGAAGAGATAGCTCGCCAATCTCTCACCAACAATTTGCTGAAGTACGGAGTTAAAGGACATCTTCTTAATGCGGGCATTTGCCAACTCTGTAAAGGGGATGTCATTGCTATAACCAATGCATTAGAGAGATATCAGGAATTGGACCCAACATTTTCAGGAACACGTGAATATAGATTTTTGGCGGATATTGCTGCTGCAATTGATGAAGAAGATATTGGAAATTTTACTGATGTTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCATGGAAGACAACACTACTTTTGAGGGTGAAGGAAAAGCTGAAAGTGAAAGAACTTGAAGAGGATGATCTCACTTGA 870 0.3839 MSDQLAKAEEFEKKAEKKLTGWGLFGSKYEDASDLFDKSANSFKLAKSWDKAGATYLKLANCHLKLESKHEAAQAYVDAAHCYKKTNITESVNCLDHAVNLLCDIGRLSMAARYLKEIAELYESEQNIEQAVVYYEKSADFYENEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLTNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQELDPTFSGTREYRFLADIAAAIDEEDIGNFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKVKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1596 289 Coils Coil 151 178 - -
Lal4g1596 289 Gene3D Tetratricopeptide repeat domain 4 288 IPR011990 GO:0005515
Lal4g1596 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Lal4g1596 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Lal4g1596 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Lal4g1596 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Lal4g1596 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Lal4g1596 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Lal4g1596 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Lal4g1596 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Lal4g1596 289 CDD SNAP 19 278 IPR000744 GO:0006886
Lal4g1596 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Lal4g1596 289 SUPERFAMILY TPR-like 7 278 IPR011990 GO:0005515
Lal4g1596 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Lal4g1596 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Lal4g1596 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Lal4g1596 289 Coils Coil 271 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1596 Lal-Chr4 20138513 20142965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1596 K15296 - gmx:100812517 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1596 4 20138513 20142965 Lal4g1596 4 20138513 20142965 ECH
Lal4g1596 4 20138513 20142965 Lal21g1273 21 15956172 15961068 LSH
Lal4g1596 4 20138513 20142965 Lal22g0202 22 1258490 1262844 PCT
Lal22g0202 22 1258490 1262844 Lal4g1596 4 20138513 20142965 PCT